G46742


Basic Information

Item Value
gene id G46742
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42699506 ~ 42701068 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58280
CTGGGTATACCTGCCAGCGCCGGACTGCCCTCTCACCTGAGCAAACTGGACAGCGGGTGCGATGAGGAGCTGTGCCCCCCGCCGCCGCCACCCCCGCCGGCGCCCGAGGAGCCGCTACCGAGCCCTGTGGACTGCCGCTTGCCGGAGAGCAGCTTCTCGACGGCGGCGAGGTTCCCCGTGCGGGCCGCCTCCAGGAGTTCCTGCTCTTTCCCCATCCCGAGCCGAGCAGGGACAGAGGGGCACAATGGGGGTTGGCTCCGGCGATCCCGTCTCGCTGGCTCTGCGGAGGGTTCACACACGTCTTCAGATCCAGTGGTGCCTTTGAAGACGGTAAGATCCTCCACGGTGGCTCGACCCTTCCTGCGCTACTCGCACCCCGGATTCCAGCTCCCCTCCGCCGCTCCGGGGAAAGTTTCTTTCAGCACCACCGGGCAAACTTCCTCCGACTGCCCCTGACACGTCACTTCCTCGGGACGGCCTCCTCCCCGTGACGTCATTTGCCCTGCCCCCCAGTGGTGGAACCCGCTATAGGACCCAGATCTGCAGCAAGTCTGACCCACTTCAGACTCTCTGTGCTTTGCAATCTCTACACTGTTATCAGCAGCACTGCACTCAAATGGAGATCAAATCACAGGATCATTTTATTCCAAGCTCTCATTTGAAGCATACTGTATTACTCTATTCTTTACCCACAGAAACTCACATACCAATGTCCTGTAGATGAACTGCAATTATAATCTCTCCGTTATcaagaataaatgaataaataaagtttcCACCTGCATCAGATGAGTCTACAATCAAGACAAGCTGAGGTTTCTCACtgcaagtttgttttttaatcaagttTATAAAGTGGGAGAGTGTGCCAGGACAGGAGGGGCTGGCCCCACAAGATGAG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58280 True 901 TUCP 0.56 2 42699506 42701068

Neighbor

gene id symbol gene type direction distance location
AMCG00013781 taf11,LOC107673466,LOC107554211 coding downstream 473 42695837 ~ 42699033 (-)
AMCG00013778 cunh6orf106,LOC107696455,LOC107724532,LOC107666165,LOC107595408,LOC107744375 coding downstream 44500 42644530 ~ 42655006 (-)
AMCG00013779 NA coding downstream 101697 42583819 ~ 42597809 (-)
AMCG00013775 rps10,LOC107595410 coding downstream 199810 42496085 ~ 42499696 (-)
AMCG00013772 NA coding downstream 224087 42468731 ~ 42475419 (-)
AMCG00013784 NA coding upstream 122070 42823138 ~ 42832422 (-)
AMCG00013790 timm17a coding upstream 246014 42947082 ~ 42953954 (-)
AMCG00013788 NA coding upstream 255711 42956779 ~ 42968205 (-)
AMCG00013789 shisa4 coding upstream 268041 42969109 ~ 42975539 (-)
AMCG00013794 ipo9,LOC106566056 coding upstream 279184 42980252 ~ 42994906 (-)
G46735 NA non-coding downstream 3858 42693662 ~ 42695648 (-)
G46733 NA non-coding downstream 6845 42692330 ~ 42692661 (-)
G46732 NA non-coding downstream 9064 42689088 ~ 42690442 (-)
G46731 NA non-coding downstream 12527 42686709 ~ 42686979 (-)
G46714 NA non-coding downstream 129621 42564530 ~ 42569885 (-)
G46815 NA non-coding upstream 297657 42998725 ~ 42998924 (-)
G46817 NA non-coding upstream 300413 43001481 ~ 43001703 (-)
G46849 NA non-coding upstream 334495 43035563 ~ 43069736 (-)
G46855 NA non-coding upstream 368904 43069972 ~ 43070173 (-)
G46982 NA non-coding upstream 821260 43522328 ~ 43522882 (-)
AMCG00013773 NA other downstream 243748 42428777 ~ 42455758 (-)
AMCG00013732 NA other downstream 2062278 40618343 ~ 40637228 (-)
G46423 NA other downstream 2090978 40603601 ~ 40608528 (-)
G46418 NA other downstream 2112114 40586816 ~ 40587392 (-)
AMCG00013730 NA other downstream 2270881 40386061 ~ 40428625 (-)
AMCG00013820 tmem167b other upstream 908214 43609282 ~ 43614579 (-)
AMCG00013846 NA other upstream 2637791 45338859 ~ 45344015 (-)
G47261 NA other upstream 2922170 45623238 ~ 45623895 (-)
AMCG00013882 cry4,LOC108413014 other upstream 3218568 45919636 ~ 45928309 (-)
AMCG00013883 NA other upstream 3261122 45962190 ~ 45974311 (-)

Expression


Co-expression Network