G47032


Basic Information

Item Value
gene id G47032
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43700924 ~ 43712011 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58645
caagtgaaagcattttaattagaaacaagacaaaactaattttatttttttatttgttaaaaaagaaagaatgacaacaaaataaaacctttcatgGTCAATACCATGTGCCTCATGATACCACAGTAACGTCTATAGATCATTGAGAGCACTACAGGAAATCAATAGTTTGCCGACACACCTAACAGGAACACAAAGAGCTCAGAGTGCCAACAACAGGTCCAAATGGGGGGCATTTGCCACCATATCCCAGTACAGTCTTTCCTTAGTTCAGTTTCTTTGCATTTCAGAGAAAAGGCTGGGGGTGTTGAGACCTCACCAGTTCCAGTTTCTCATACTgcatctttcatttaaaaatgaatgggcCATACAAACAATGTAGGAGAAACTATCTGtacataatttttaaaaacctaGCTATATTGCATCTTTTCCTTTTAAGGTcaccatttaattttttttttcacacatttcagtCTCAAACTAGTTAAAAACAAGTCTTGGAAAGTACTATGAAACAAAAAGGCAACAatactaaaataacatttaaatagaaccttaaaaaaaaaaatctactgtaCATAAACTGAATTGGCACCTTAACggcaataaaaactaaaatctgttACATTGATGTAGGTTGTCATGGAAGTTTGTGTGAAAACACTAGTGATCTGTAGCCTCTGCAATATTATGGAGGTCACCTGAAATCTCAAGTCATGCCCATATTTGTGGAGTACAAAAgaatgaacaaacacaaataaccaCAACCTCCACTTATCAGTTGATGCCAAAAAGATCAAACACTCTTTTCAAAGAACCAggccattttaaaacattgaaattcGATAAGCAACATACAAACCCCCTTTGCAcaatccaaaacaaaaatataaaattctaAAAATGTGCAAGGAACTCCCTTGAAAGGACATCATCAGGTTTTGAACAGGACTCACTGAAGGCTGAAACTTCTGCGCgtttccttccctctctcccagaGCACTTCAGTCAGTTGTTGCAGAATACATCAGAAAGGCTTCGAGGTCAAATGGCTATCCAAAACAAACGGGCGAGATCCTAATATTACCGACATTAGTTTCCATTGTGTGCGCATTATGTGCTCCTACCTTTCATAACCGAATACTCGGAGCAGGATTGTGTTTAATGTTAGCTCTGAAGATACGATTTCTAAATCTGTGATTATGCTTACATGGAAAACCATATTTTGCCATTTCTGCAACATGGGATATAAAACACTTCCTAATCAGTTTCCATTGTATTCATGGGTTCATACCATTTCCAGGTAGCCAATTGacctttacaaaaaacaaaaacaagatcagACGCATCATAAAAGGGGACGTTGCTAAAATAAGTGAGCTGGTCTCCGGTTTAAACAGGCTAGACAGACATCGTCCGTTTCCAGTGAGAAGGACAATggatgtaaatgtaatttggtACTACTCTCACTACAGTGCAAATTAGTTCCTTATACCCTTGGGAGAAAAATCAGGCAGTTAAATTGGCACATTTCTTATACAATACATACTggaacacacacattaaaagctGCAGCAAGTTTTGAATTTAAGAATATAGAGATCCCCCACCAACCCTGCATCATGGTTTATCAGAGAGACTACCAGACCGTGCAACTGACAGATAGTGTAAACCACTTAAAACAAGTCCTTGTTCCAAAAGGTTGGCACAGGACCAATATACATgtcacttatttaatttgttacttcTATAATGCCCGTCCAGGTCATGGCATGATGGGTGGATCGTCGAGCAAGTCCAAAAAAAGTCAGCAATCCGACTCCCAGAACTGTGCTTGGGAAACCAGTAAGGAATTTGCCATGTTTAAGTGTGATTAATGTCGGCGcttctgcatttgtttacatatcCTGGTCTGCTGGTGCATTTTGTTCCCGTTACGCAACATTAACATTGAACATTTTGTAAGCATGCCAAAAAAAATTCACTGCCATTTCTCAGGTTTTAAATCTTATTCGAAATATTTCCAAGTTCTTAACTCCTTTAATTATCGTACATACCGCTATACTTT
>TU58646
caagtgaaagcattttaattagaaacaagacaaaactaattttatttttttatttgttaaaaaagaaagaatgacaacaaaataaaacctttcatgGTCAATACCATGTGCCTCATGATACCACAGTAACGTCTATAGATCATTGAGAGCACTACAGGAAATCAATAGTTTGCCGACACACCTAACAGGAACACAAAGAGCTCAGAGTGCCAACAACAGGTCCAAATGGGGGGCATTTGCCACCATATCCCAGTACAGTCTTTCCTTAGTTCAGTTTCTTTGCATTTCAGAGAAAAGGCTGGGGGTGTTGAGACCTCACCAGTTCCAGTTTCTCATACTgcatctttcatttaaaaatgaatgggcCATACAAACAATGTAGGAGAAACTATCTGtacataatttttaaaaacctaGCTATATTGCATCTTTTCCTTTTAAGGTcaccatttaattttttttttcacacatttcagtCTCAAACTAGTTAAAAACAAGTCTTGGAAAGTACTATGAAACAAAAAGGCAACAatactaaaataacatttaaatagaaccttaaaaaaaaaaatctactgtaCATAAACTGAATTGGCACCTTAACggcaataaaaactaaaatctgttACATTGATGTAGGTTGTCATGGAAGTTTGTGTGAAAACACTAGTGATCTGTAGCCTCTGCAATATTATGGAGGTCACCTGAAATCTCAAGTCATGCCCATATTTGTGGAGTACAAAAgaatgaacaaacacaaataaccaCAACCTCCACTTATCAGTTGATGCCAAAAAGATCAAACACTCTTTTCAAAGAACCAggccattttaaaacattgaaattcGATAAGCAACATACAAACCCCCTTTGCAcaatccaaaacaaaaatataaaattctaAAAATGTGCAAGGAACTCCCTTGAAAGGACATCATCAGGTTTTGAACAGGACTCACTGAAGGCTGAAACTTCTGCGCgtttccttccctctctcccagaGCACTTCAGTCAGTTGTTGCAGAATACATCAGAAAGGCTTCGAGGTCAAATGGCTATCCAAAACAAACGGGCGAGATCCTAATATTACCGACATTAGTTTCCATTGTGTGCGCATTATGTGCTCCTACCTTTCATAACCGAATACTCGGAGCAGGATTGTGTTTAATGTTAGCTCTGAAGATACGATTTCTAAATCTGTGATTATGCTTACATGGAAAACCATATTTTGCCATTTCTGCAACATGGGATATAAAACACTTCCTAATCAGTTTCCATTGTATTCATGGGTTCATACCATTTCCAGGTAGCCAATTGacctttacaaaaaacaaaaacaagatcagACGCATCATAAAAGGGGACGTTGCTAAAATAAGTGAGCTGGTCTCCGGTTTAAACAGGCTAGACAGACATCGTCCGTTTCCAGTGAGAAGGACAATggatgtaaatgtaatttggtACTACTCTCACTACAGTGCAAATTAGTTCCTTATACCCTTGGGAGAAAAATCAGGCAGTTAAATTGGCACATTTCTTATACAATACATACTggaacacacacattaaaagctGCAGCAAGTTTTGAATTTAAGAATATAGAGATCCCCCACCAACCCTGCATCATGGTTTATCAGAGAGACTACCAGACCGTGCAACTGACAGATAGTGTAAACCACTTAAAACAAGTCCTTGTTCCAAAAGGTTGGCACAGGACCAATATACATgtcacttatttaatttgttacttcTATAATGCCCGTCCAGGTCATGGCATGATGGGTGGATCGTCGAGCAAGTCCAAAAAAAGTCAGCAATCCGACTCCCAGAACTGTGCTTGGGAAACCAGTAAGGAATTTGCCATGTTTAAGTGTGATTAATGTCGGCGcttctgcatttgtttacatatcCTGGTCTGCTGGTGCATTTTGTTCCCGTTACGCAACATTAACATTGAACATTTTGTAAGCATGCCAAAAAAAAGTcactaccacaactgaagcttTAGTGTAAATCAGTGGGTTATTGTTGGTTTGTGCACCCAGAGTTGGAATTGTCAGTTCCCTGATTTAAACCTGTTCCAAGGGATGGGTGAAGAGAGTCATTTGGACACAGATAAACACTTAAAACTGCACTTGGTGTTGCTCTTTTAAGGACTAGTCTAACTTATGCAATTATATCGATTAGAACACAAACCTATATacgaaaaaatgtatataaagtatTAGTATTACAATACTACAAAGACTGAAAATGGTTATGCCTTAACTGCATTGAAGCCTGAGAtcagagagagaatgtgtggtGAGGAATCCGTGTAGTCTGGAGTCACACGGGTAGAGAGAAAAGTGAATGTTGATCAATAACTTTTTCTGGAAGAAAAGCCAGGGAAGGAATCTGGAAGTGAAATGAATCTAACCTGGAtttcacacacacctgtagGTTTACTATACAGAATACAATCAGAATGAAATAGCCCTTGTTGCAATTGCTGAAAGAATGGGATCAAATGGGTTGTCCAGAAAATCAAAATCTACGCGTTTAGCTCTTTGCAACACTGCACAGACTAAGATGGATCAATATACAAGTTAAgttaggtaaaaaaaaacaaaaaaacattgcactACAACTACCGGCCTACCACCTGCGCTTGAACACCTGCGTCTGAAAGAATTAAACCACCCTCGCTGAAACGTGATCATAACGAAGGTCACAGGGATTGTGGTTTCCTTTGATCTCAATATCTCAACACTTTTATATTACATGGAATGCGTCCATCAagatttttgtgattttaaattactttttacacCCACAGAGCTGGTTCAACTCAGCATCAGCACATTGAGAACTAATTTCTCAGACGCACAGGGAGGCTGGGGGTGTTtcagggggtggggagggaagTGATGTAGGAGTTGTGGAGAGCAGCAGTTCCATGACAAAAACGCTGCCGTCTGACCCAAAGAGTAATTTTTTCTCCTTCCATATGAAAAGGCACTAGATGCACATGTTCTACCCGGACGGACTAGAGGACGCCAAAAGGTCCTAAACGCTGTCCTCTGAGGTTTTCAGCTCCGTGCTGGCTCTCGTGGAATTCACGTCGTTGCTGGCCTCCTTCTCCTTGATGGCATTGTCCAGGTTCGTCTCCTCCTCCTTGTTCTCCTGCCTCTCTCTGATCTCCTCGGCCTTGCGCTCCCGGTCCAGCAGCCTGTAGTTGATCCCCATGCCTACGAACAGGAAGATGCTGCCGATGACCATGACGATGCCGCAGCCATAGTAGGTGTACTTGTAGTCACCGTAGACATCGTTCAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58645 False 2071 lncRNA 0.37 3 43700924 43712011
TU58646 True 3317 lncRNA 0.40 2 43700924 43704266

Neighbor

gene id symbol gene type direction distance location
AMCG00013824 NA coding upstream 4599 43687352 ~ 43696325 (+)
AMCG00013818 NA coding upstream 25683 43672233 ~ 43675241 (+)
AMCG00013816 NA coding upstream 32440 43657227 ~ 43668484 (+)
AMCG00013821 NA coding upstream 69326 43630468 ~ 43631598 (+)
AMCG00013817 NA coding upstream 80215 43618051 ~ 43620709 (+)
AMCG00013826 NA coding downstream 392160 44104171 ~ 44123031 (+)
AMCG00013827 rhoc,rhocb,LOC106582735,LOC105908082,LOC107668165,LOC108271788,LOC108427591,LOC107679717,LOC107569805 coding downstream 433460 44145471 ~ 44150277 (+)
AMCG00013829 NA coding downstream 491403 44203414 ~ 44221190 (+)
AMCG00013833 kcnd3,LOC101073956,LOC102776651,LOC102303593 coding downstream 817707 44529718 ~ 44530827 (+)
AMCG00013834 NA coding downstream 923468 44635479 ~ 44661638 (+)
G46949 NA non-coding upstream 236918 43462771 ~ 43464006 (+)
G46940 NA non-coding upstream 248909 43432376 ~ 43452015 (+)
G46941 NA non-coding upstream 257628 43441497 ~ 43443296 (+)
G46905 NA non-coding upstream 348509 43350853 ~ 43352415 (+)
G46861 NA non-coding upstream 614324 43086390 ~ 43086600 (+)
G47040 NA non-coding downstream 207658 43919669 ~ 43919967 (+)
G47080 NA non-coding downstream 510397 44222408 ~ 44223401 (+)
G47106 NA non-coding downstream 577046 44289057 ~ 44291796 (+)
G47107 NA non-coding downstream 586258 44298269 ~ 44298664 (+)
G47110 NA non-coding downstream 617282 44329293 ~ 44329547 (+)
G46945 NA other upstream 260226 43438492 ~ 43440698 (+)
G46862 NA other upstream 611281 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 656488 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 1039080 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 1052170 42644987 ~ 42648754 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 1322761 45034772 ~ 45095669 (+)
G47206 NA other downstream 1614647 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 2104361 45816372 ~ 45823228 (+)
G47398 NA other downstream 2222648 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 2231560 45943571 ~ 45959194 (+)

Expression


Co-expression Network