G47106


Basic Information

Item Value
gene id G47106
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44289057 ~ 44291796 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58732
TTGGTTGAATGTGATGTAAATACAGTCAGAGGCAGCATTTTCCAGGCGGTATGTAAAGTCCATCATGCCATTTCACAGGCACTTGAACCTGCATATATATTGAACAGCGTGATCTTTCAGCTGCAGCAGTTCAATTGAGAAACGGCACTGAGTGAAACACAAGTCATCAGTATCTCTGAGCAAAGTACaaatatgcatgcatttaattagtGCACCGATTATTGCGGTTAAAGAATGTGCTTTGTctatatatttccatatacaatacatattgtaGCCATGTTATTTTAGGTGTACAGATTGATCTTAAGAAAATGGCCCatccaacaacaacacaaatacatacttcTGTGTGGCTTTACAAGGGCAAATTGTAGGGCTCTGAAAAATATCCCATCCTACTTCCCCGCTTAAGAAAAAAATCTCTATTTCCAATAAGTATGCTTTGGCTTATCTGTTCTATATTACAAGTTAACCATTACAAAACAGTAGTAATTATCAACCAGCTGGAGAAACAGGTGAAaaagtgtagtgctacattttaagGTTTCTTTCCTTTAAGTTCTCTGTATCACATAAAAAATtgcataaaatggaaaaaataaaggactCTCTGTTGCCTATGCTGGTAAAAACCCGTCTCTCTTCACCAGGTTGAGTTCTTCACCTCTGTGGGGAACCCAGTAGTGTTACAACACTGTGTTCATTGCAGCAGTTTGAGTTAACAATTTAAAGGCCtgttttcattcaaataaatcaatgcagatCTAAATGATTGGGCTTTGAATAAACTTGACATATTCTGCATTTTTGAGCAGCTCAGCATCAGCAAACCAACGCTGGCTTGGAAAAAGTCAAGTGAAAGAGCTGACACATTTTTGAAAGAGGAAGTAAATCTTAAAAAGCTAGATGTAAGCAAAACCACAATTTAACCACTCCGAGAGCTGATTGTTTTgcttctaataataaatgtccAGAACCTTTAATTGTTCTCTTATTGTTTAATGGTTCTTTTAacctttttccagttttatattGTGGGAAACATAAGGTCAGCCTTTTAGGGTAAATCTCACTGTTCATCTCTTGGTTTAAGAGACAGGTAGCTGtacagcacaaaaacaaaattataaagtgtttccaaaatgttttagGTCCTTTTTGAGAGACATCAAGGCTCAATTAAGGCTCAGTTGTATTCTTAATCTCACTGTTGGGAATCACAGTAAAGATGTGAGAACATCTGTCTGGTCATTGGACTTCTCAGTGGGTTTATGTCACGTTTTCTTGTCCCACTTACCTTCCACAATGTGGAATCCACCTTTAGATATTTTGAATTCAGTGACCAATAAGAACGTAATAATTATGcaactttagatttttttaatatcaatttttattttctcatgtcgtttttactgtactgtactgacaagaacaataaaaatgacatgagaaaacaaattatactgaAGAATTCAAGAGCACTGTTTGCATTTCTGGGCAGCGATTGTGTCAGTATCTATAGGTATTTACTGTTACAGGCGCTTCTGCATATTTCTAAATTCAGAACTGAGCCAGGAGCAAAAGAGATGCTGATTatgacaacaaacaagcaaagatGTATGTAATGAAAAGATCCTCCtcttacaaaatcaaaaacaagccAACAAAAATGATGAACGtaggtttaaaatgtaatgtcttgATACTTGTAAAGTGAGAACATGTAACACAAAGACATGTTCCCAATGTGTCCCTTTTTCTCTCTGCTTATGTTGCTAATTGTTTTGCTAATTGCATAATGGAGCAAAATACATAATGGCAATTCAGAACAGCCCCTTCGTATGATCACATGAGAGGTATATAGGAGGCAAATGACAGTGTCACTATATATTTTGCCGTTCTGTAAGAGGTCTTTCACGCTGTTTAAAAGGTGTTTGTTCAAAGTCCACCAGGAGGCAgcgctgtctttctttttagaTCCACGAAAACAGTCGGaactggaaatgtttttacCTTCTGAGTGAGGTCTTGGGAGTTATCTGGTGACTTCATTTCCCCCCTATCCTCTTTGAATACCAaattgtgcatgtgtatatgtacatatgtttAACCACAGAAAGGCAAAAAGAAAGCATGGCTAAACAACATCTCCATGTGGAAGACGTTTAGGTTAACATAAAAGTTTCCTATTCGGCACAGATCAAATAATTTCCTATCCTAAAATGTGACTATTGGCACCAACCCGCTGAATACAGTAATGGTATGTATTACGTAGACGTGTTTTACTAAGAttcttggaaaaaatattaGCTGCCAAAGTCTCAAAATTGAAAGTATACCTTGCTTATATTGCGGCAccaaaatcatattaatatgAAAGTCTTTGTTAGTAGCATTGCATTGTAACTATAGTTTGTTTCACCTGAACATTgcaccttttttttcctcttattttttgtttagaacCAAAATTTCAATATACGTCAAATGAAAACCATTGTAGACCATTGCagtatcaaattaaatcaaatcataaGAAATATCATCCATAGCCATGTGATTTCAGAGGTGCTATCTTGAGTAGAAACAACATTACAGATTCCTGCATTTCCTTTTGGGCTTATTACAAAGCCCTAGTATCTTATGACCAAGAAAACTACACAATATGACTTCATGTACACGACAATAAATGACAGTTTCATTAGTGAGAGTCAGGTTATTCATTTTGGTATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58732 True 2740 lncRNA 0.36 1 44289057 44291796

Neighbor

gene id symbol gene type direction distance location
AMCG00013829 NA coding upstream 67867 44203414 ~ 44221190 (+)
AMCG00013827 rhoc,rhocb,LOC106582735,LOC105908082,LOC107668165,LOC108271788,LOC108427591,LOC107679717,LOC107569805 coding upstream 138780 44145471 ~ 44150277 (+)
AMCG00013826 NA coding upstream 166026 44104171 ~ 44123031 (+)
AMCG00013824 NA coding upstream 592732 43687352 ~ 43696325 (+)
AMCG00013818 NA coding upstream 613816 43672233 ~ 43675241 (+)
AMCG00013833 kcnd3,LOC101073956,LOC102776651,LOC102303593 coding downstream 237922 44529718 ~ 44530827 (+)
AMCG00013834 NA coding downstream 343683 44635479 ~ 44661638 (+)
AMCG00013837 NA coding downstream 403983 44695779 ~ 44696771 (+)
AMCG00013839 NA coding downstream 609236 44901032 ~ 44919261 (+)
AMCG00013840 LOC104957825,LOC107725284 coding downstream 641504 44933300 ~ 44940161 (+)
G47080 NA non-coding upstream 65656 44222408 ~ 44223401 (+)
G47040 NA non-coding upstream 369090 43919669 ~ 43919967 (+)
G47032 NA non-coding upstream 577046 43700924 ~ 43712011 (+)
G46949 NA non-coding upstream 825051 43462771 ~ 43464006 (+)
G46940 NA non-coding upstream 837042 43432376 ~ 43452015 (+)
G47107 NA non-coding downstream 6473 44298269 ~ 44298664 (+)
G47110 NA non-coding downstream 37497 44329293 ~ 44329547 (+)
G47158 NA non-coding downstream 669813 44961609 ~ 44963472 (+)
G47184 NA non-coding downstream 976258 45268054 ~ 45268386 (+)
G47186 NA non-coding downstream 987958 45279754 ~ 45281095 (+)
G46945 NA other upstream 848359 43438492 ~ 43440698 (+)
G46862 NA other upstream 1199414 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 1244621 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 1627213 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 1640303 42644987 ~ 42648754 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 742976 45034772 ~ 45095669 (+)
G47206 NA other downstream 1034862 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 1524576 45816372 ~ 45823228 (+)
G47398 NA other downstream 1642863 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 1651775 45943571 ~ 45959194 (+)

Expression


Co-expression Network