G47186


Basic Information

Item Value
gene id G47186
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45279754 ~ 45281095 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58834
TTAGATTAGAACATTTATTTCTCAAGAGAGAAAATATAGATTCAGACAGTCAGGTTATAGTGGGTAAAATCTGCAATTTGTACAAGCGTAGAATCTCTCTCAGAGGCATCTTATAAACAGATCtagaaagcaaataaacactttctacaataaatacaacattctGTGCTTCAGCAGCGGACTTACAGCAATACTCCGGCCCTAGGGCAACACCTCGGggacaatacaaagaaaatcataaaatgtagtaaaagtgttttaaaatctcGATATTATTACAACGTTATACATGGGTCACAAAGTCCactgttctttttatttatctttttatttcatgttaaattaCTGATCTATTTACTTTCAATTgtcaaacaatattttttttgctttccttaaataaattacattttgtgtattaaaaaaaaaaaaaaaaaaaaaaaatgaatctgggAAAACaaacgagagaaaaaaaaacgatcGTGGATTTCTGTTGTCATCGCCTTTGTGAAACGGTTTCTTTCGTCTGGAGTTTTGGTTGTTGGCCGGACACCCCGGTGCCTCTCGGGGAGCGGGGACTCTGCGGACCCCCGGAGAGAAGGGGGTCTTTCCGTCGCTCCGCCTCTCACCCAGTGGCCTCCTTTCTCCCATAATCTGTAGGTAGCagtctctcttccctctctttctctccctctcttcctccattGTGAGGTTGAAGGATGAATCCACGGTGTGTccgtccctctccctcccccggCCTGTCTACAGGTAGTTGGAGGTGACGAAGCCGTGGTCTCCCCTCACCCGGCTGAGGTGGATCATGGCGCGGTCGTAGGCCACCTGGACGGACTTGCGGATGCTCGTCTTCCGCCCCTCCATCATGCGCAGCTTGTCCACCGTGTCATCCACCCCCAAGGGCAGCACCTTGTCGCGCGGGAGCCACTGCCTGCGCCCggagacaaac

Function

NR:

description
PREDICTED: carnitine O-palmitoyltransferase 1, liver isoform-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58834 True 961 lncRNA 0.45 2 45279754 45281095

Neighbor

gene id symbol gene type direction distance location
AMCG00013840 LOC104957825,LOC107725284 coding upstream 339593 44933300 ~ 44940161 (+)
AMCG00013839 NA coding upstream 360493 44901032 ~ 44919261 (+)
AMCG00013837 NA coding upstream 582983 44695779 ~ 44696771 (+)
AMCG00013834 NA coding upstream 618116 44635479 ~ 44661638 (+)
AMCG00013833 kcnd3,LOC101073956,LOC102776651,LOC102303593 coding upstream 748927 44529718 ~ 44530827 (+)
AMCG00013841 LOC101476397 coding downstream 65512 45346607 ~ 45353929 (+)
AMCG00013849 kif21b coding downstream 138818 45419913 ~ 45431617 (+)
AMCG00013848 LOC106582687 coding downstream 161991 45443086 ~ 45456185 (+)
AMCG00013851 LOC101073987,LOC107714485,LOC106582685,LOC105898132 coding downstream 209642 45490737 ~ 45494667 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding downstream 270878 45551973 ~ 45569316 (+)
G47184 NA non-coding upstream 11368 45268054 ~ 45268386 (+)
G47158 NA non-coding upstream 316282 44961609 ~ 44963472 (+)
G47110 NA non-coding upstream 950207 44329293 ~ 44329547 (+)
G47107 NA non-coding upstream 981090 44298269 ~ 44298664 (+)
G47106 NA non-coding upstream 987958 44289057 ~ 44291796 (+)
G47188 NA non-coding downstream 2297 45283392 ~ 45283600 (+)
G47189 NA non-coding downstream 2745 45283840 ~ 45284159 (+)
G47190 NA non-coding downstream 5421 45286516 ~ 45286853 (+)
G47192 NA non-coding downstream 10178 45291273 ~ 45292900 (+)
G47194 NA non-coding downstream 14408 45295503 ~ 45354414 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 184085 45034772 ~ 45095669 (+)
G46945 NA other upstream 1839056 43438492 ~ 43440698 (+)
G46862 NA other upstream 2190111 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2235318 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 2617910 42650190 ~ 42661844 (+)
G47206 NA other downstream 45563 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 535277 45816372 ~ 45823228 (+)
G47398 NA other downstream 653564 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 662476 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1756000 47037095 ~ 47073708 (+)

Expression


Co-expression Network