G47190


Basic Information

Item Value
gene id G47190
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45286516 ~ 45286853 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58838
GGCGCTCCTCTGGGACTGCAGGTGCGAGTGCAGCCGGCGGATCAGCGGGACCCCGTTCCTCGACTGGCGCTTCAGCAGCCAGTAGTTGTGCAGCCGCTGCATGAACTGGTTCTTGCGCTGCACGGGAACGCCGATACAGATCTTATTCAGCCTgcgagaggagaggagaggacatCAACACAGTCGCCCACATCACCGTCTTTTCAAATCATCAACTTCTGTGTCACTGAGTTGTGCACTGGGCGCTGCCACACAAATAGTCGCTTCTCTCGCCCTGTTAATACAGACACGATCGCTTACTAACAATCCCTCTCTGCTGGGGGAGGAGATCACGGATT

Function

NR:

description
PREDICTED: myotubularin-related protein 13 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58838 True 338 lncRNA 0.57 1 45286516 45286853

Neighbor

gene id symbol gene type direction distance location
AMCG00013840 LOC104957825,LOC107725284 coding upstream 346355 44933300 ~ 44940161 (+)
AMCG00013839 NA coding upstream 367255 44901032 ~ 44919261 (+)
AMCG00013837 NA coding upstream 589745 44695779 ~ 44696771 (+)
AMCG00013834 NA coding upstream 624878 44635479 ~ 44661638 (+)
AMCG00013833 kcnd3,LOC101073956,LOC102776651,LOC102303593 coding upstream 755689 44529718 ~ 44530827 (+)
AMCG00013841 LOC101476397 coding downstream 59754 45346607 ~ 45353929 (+)
AMCG00013849 kif21b coding downstream 133060 45419913 ~ 45431617 (+)
AMCG00013848 LOC106582687 coding downstream 156233 45443086 ~ 45456185 (+)
AMCG00013851 LOC101073987,LOC107714485,LOC106582685,LOC105898132 coding downstream 203884 45490737 ~ 45494667 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding downstream 265120 45551973 ~ 45569316 (+)
G47189 NA non-coding upstream 2357 45283840 ~ 45284159 (+)
G47188 NA non-coding upstream 2916 45283392 ~ 45283600 (+)
G47186 NA non-coding upstream 5421 45279754 ~ 45281095 (+)
G47184 NA non-coding upstream 18130 45268054 ~ 45268386 (+)
G47158 NA non-coding upstream 323044 44961609 ~ 44963472 (+)
G47192 NA non-coding downstream 4420 45291273 ~ 45292900 (+)
G47194 NA non-coding downstream 8650 45295503 ~ 45354414 (+)
G47232 NA non-coding downstream 282556 45569409 ~ 45574313 (+)
G47255 atp5f1,LOC107679218,LOC107731279,LOC107711984 non-coding downstream 329280 45616133 ~ 45620232 (+)
G47258 NA non-coding downstream 335734 45622587 ~ 45622806 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 190847 45034772 ~ 45095669 (+)
G46945 NA other upstream 1845818 43438492 ~ 43440698 (+)
G46862 NA other upstream 2196873 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2242080 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 2624672 42650190 ~ 42661844 (+)
G47206 NA other downstream 39805 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 529519 45816372 ~ 45823228 (+)
G47398 NA other downstream 647806 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 656718 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1750242 47037095 ~ 47073708 (+)

Expression


Co-expression Network