G47194


Basic Information

Item Value
gene id G47194
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45295503 ~ 45354414 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58842
tGGTATAAATTCACTTTAATCACTTTACAAATATtcaagtaaatatttattttcttaacaagGCTCACCtctgcaaaaacaacacattaaaaaaatacatatatatggcaGACAATAGATCCCGATACTTTGTGTGaagatataaaaacacaacaggaatTGCATAAAGAAACCCCCAACCTCCCTGTAACTCAAGGTTTCCCAATCCTGGGCCTTGTGTTCCCAGTTCCTCCGGGTTTGCGGATCCCACTGGCTGCTCCATGACTCTACTGCACCATCGATTGAGCTCAGCACGGGCTTTATAAGACCTAATTAAGGCTTTCGGTGGGCATGCAATGGGACATTTTGAATTGTCTTTCAAAGCTTGTATGTTACTTGAGACCTGCAACTTTAGAACCATTTAAAAGGCCTTACCGAGCTTGTTATTAGCCCACGTAAGAggtaaaataagtaattaattcagctgggacagaaaataaataccgCTGTCCGTAAGGCTGGGATTGAGAACATTTGGTCACAGTGGCTGAGGAGCACACTGTTGTCGCTGGCCAAGACTATCCACCCCCTGGGGCATCCCATCTCTCCAGTACAGCAGCTCTTTAAAGGCTCCTtatctcccttcccctctctttcAATGTCTTATCAACTGCTCCTCTGGTCTGAAAGGGATGCGTTTAGATTATAACCAGCCAAGCCGGCACTCCCGCCCCCCTCACATCCTGCATATACCCTCAGTTGAGTGTGGAGATTACTGGGTTCTCCTCCCAGGAGCATGCTCACAAGCCTTTGTTTCCAAAATGGCCGATCAGCACCAGTATAATGCTGTGATCTCCGTTCCTGGTCCTGGGGATCTCCAGCCAATCACATTCTAGAGGAGTGTCCAGTCAGAGGCTAAAgatcatatttgttttgacCAGCAACTCAATTCTTGAGTATATTATGAAGCGGAGCTCAAATAAAAACCGTAAGACACTTCGACTCAGCAGGAGAAGGGTTGAGGAGACTGTGTGAAGCAGGGAAGCCCAGTTCTGGTCCCGAACAGCTCCAGTATCTTCTGGTTGGCCTCCCACATGATCTCAAACACCTAGGCCAACGAGTGACTCTTAACCGGACTAATTTAGCATGACAAGGAATCAGAGAAACTCTGGGACTCGAGTTGTGCATCCCTGGTGTAAAGGAGTCACTTAGCTAGGTGTCAGTATTTATCCTCAGCCAGAACTCAAAACATGGACCTTGTGCTCCTCAGACTGTGCTTCTGATGAAAGAGGCACTTCCCTGCTCACAGGTGTGCAATTCTCTACACAGCCCCATCATACTGCAATGAGACCCACATCCCCCAGAAACTGTTAAATTTCCTCCATTAATGTTGTTGTCTGCGTGATGCAAAAGGCACATGGTCTTGGATGGCCTGAATTTGTCTACTCTTCTGCAAATTCccacactgcagcactgtgaACATATGCCATGTGCCTCCCCAGGCCCTGGGGACTCCTCCGGGACAAGGGCAAATGGGAACTTAAGCCCACAGGACAACAGGGAGACCACAACCTCCACGGCAAGCATGGCATTAAAATAACGCCAAAAAAGCAGATGGTCCTAAGGTTTCTCCCTTTTGTggttgattgttttgtttgttttgtcaggTCCATCAGTCCAGAAAGACCCGGGtcctgagtgtttttttaaatgcaagaatAATATCACTGAAGATAACGGATCTTAATCTTTGCCAGTTGGCTTCTACTAGACTGAATATAAACTCACCAGAAAGATAATCACAGATGCGTTGTGAAAATAAGCCTGTAAACTAGaatcaaaattaaaaccttAACCGCACACTGAACGCCCCTCCAGTTCGTAGGACTGGTGAGTGGGCAGGGTGACCTTTTAATTGCCGTTTGGCAGTTTTCCTGGCTtgcaaaaatacacaaaaagcaaaacaaggaCCTTCCAATGCAAAGTGCAGGCGCTGAAATATAACCGGCAGCGGGAGAAATCAGTCTCCTCTGAGCGCTTCACGGCCAAGCTGTGGAACCAACACCAACACTGAGAAACTATATCTATACCGATCATCGACACTGTAAACCGTTTTAAAAATCAAgctgaaagacagaaaacaatgaGTGAAAGAATCGGGGAGCGCATCGACCGTTTTAACTGCTAACCACCGCACCGCTGTCTCGATCGGAACAGTTTTCAGTCTTTGATGCGGCGACAGTTCACCCTCAGACAGGTGGAGGTTGCCGGGGCAGAGAGAGGGTCACGGAGAGAAAGACCCCCGGCTCAAACGCAGCCGGAGCCACGACTGTCTGTGGCCCCAACGGCTTTTTAAAGGTGAGACACCGGcctgcccccccctccaccGCTTAATCTGTTCGTGAGGATGTTTGAGTTCTCGGTAGGAAATCGTGGCTTTGAGGCCCTGTTTCTTTGCTCTGGGCCAAAGTCCTTGTCAGTCTTGtgtaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcctgggCAAGCATGTCCTGTCGCTGCTCAAGGTCAGATGGTCAGTGTGCACCGCCTCCGGGAGTCTCGCCTTGGGAATGGGACGAAGCTCTTCACCTCGTCAAACGACAGGCCTGcggggagaggagggagagatgaGTGAGGCA
>TU58844
tGGTATAAATTCACTTTAATCACTTTACAAATATtcaagtaaatatttattttcttaacaagGCTCACCtctgcaaaaacaacacattaaaaaaatacatatatatggcaGACAATAGATCCCGATACTTTGTGTGaagatataaaaacacaacaggaatTGCATAAAGAAACCCCCAACCTCCCTGTAACTCAAGGTTTCCCAATCCTGGGCCTTGTGTTCCCAGTTCCTCCGGGTTTGCGGATCCCACTGGCTGCTCCATGACTCTACTGCACCATCGATTGAGCTCAGCACGGGCTTTATAAGACCTAATTAAGGCTTTCGGTGGGCATGCAATGGGACATTTTGAATTGTCTTTCAAAGCTTGTATGTTACTTGAGACCTGCAACTTTAGAACCATTTAAAAGGCCTTACCGAGCTTGTTATTAGCCCACGTAAGAggtaaaataagtaattaattcagctgggacagaaaataaataccgCTGTCCGTAAGGCTGGGATTGAGAACATTTGGTCACAGTGGCTGAGGAGCACACTGTTGTCGCTGGCCAAGACTATCCACCCCCTGGGGCATCCCATCTCTCCAGTACAGCAGCTCTTTAAAGGCTCCTtatctcccttcccctctctttcAATGTCTTATCAACTGCTCCTCTGGTCTGAAAGGGATGCGTTTAGATTATAACCAGCCAAGCCGGCACTCCCGCCCCCCTCACATCCTGCATATACCCTCAGTTGAGTGTGGAGATTACTGGGTTCTCCTCCCAGGAGCATGCTCACAAGCCTTTGTTTCCAAAATGGCCGATCAGCACCAGTATAATGCTGTGATCTCCGTTCCTGGTCCTGGGGATCTCCAGCCAATCACATTCTAGAGGAGTGTCCAGTCAGAGGCTAAAgatcatatttgttttgacCAGCAACTCAATTCTTGAGTATATTATGAAGCGGAGCTCAAATAAAAACCGTAAGACACTTCGACTCAGCAGGAGAAGGGTTGAGGAGACTGTGTGAAGCAGGGAAGCCCAGTTCTGGTCCCGAACAGCTCCAGTATCTTCTGGTTGGCCTCCCACATGATCTCAAACACCTAGGCCAACGAGTGACTCTTAACCGGACTAATTTAGCATGACAAGGAATCAGAGAAACTCTGGGACTCGAGTTGTGCATCCCTGGTGTAAAGGAGTCACTTAGCTAGGTGTCAGTATTTATCCTCAGCCAGAACTCAAAACATGGACCTTGTGCTCCTCAGACTGTGCTTCTGATGAAAGAGGCACTTCCCTGCTCACAGGTGTGCAATTCTCTACACAGCCCCATCATACTGCAATGAGACCCACATCCCCCAGAAACTGTTAAATTTCCTCCATTAATGTTGTTGTCTGCGTGATGCAAAAGGCACATGGTCTTGGATGGCCTGAATTTGTCTACTCTTCTGCAAATTCccacactgcagcactgtgaACATATGCCATGTGCCTCCCCAGGCCCTGGGGACTCCTCCGGGACAAGGGCAAATGGGAACTTAAGCCCACAGGACAACAGGGAGACCACAACCTCCACGGCAAGCATGGCATTAAAATAACGCCAAAAAAGCAGATGGTCCTAAGGTTTCTCCCTTTTGTggttgattgttttgtttgttttgtcaggTCCATCAGTCCAGAAAGACCCGGGtcctgagtgtttttttaaatgcaagaatAATATCACTGAAGATAACGGATCTTAATCTTTGCCAGTTGGCTTCTACTAGACTGAATATAAACTCACCAGAAAGATAATCACAGATGCGTTGTGAAAATAAGCCTGTAAACTAGaatcaaaattaaaaccttAACCGCACACTGAACGCCCCTCCAGTTCGTAGGACTGGTGAGTGGGCAGGGTGACCTTTTAATTGCCGTTTGGCAGTTTTCCTGGCTtgcaaaaatacacaaaaagcaaaacaaggaCCTTCCAATGCAAAGTGCAGGCGCTGAAATATAACCGGCAGCGGGAGAAATCAGTCTCCTCTGAGCGCTTCACGGCCAAGCTGTGGAACCAACACCAACACTGAGAAACTATATCTATACCGATCATCGACACTGTAAACCGTTTTAAAAATCAAgctgaaagacagaaaacaatgaGTGAAAGAATCGGGGAGCGCATCGACCGTTTTAACTGCTAACCACCGCACCGCTGTCTCGATCGGAACAGTTTTCAGTCTTTGATGCGGCGACAGTTCACCCTCAGACAGGTGGAGGTTGCCGGGGCAGAGAGAGGGTCACGGAGAGAAAGACCCCCGGCTCAAACGCAGCCGGAGCCACGACTGTCTGTGGCCCCAACGGCTTTTTAAAGGTGAGACACCGGcctgcccccccctccaccGCTTAATCTGTTCGTGAGGATGTTTGAGTTCTCGGTAGGAAATCGTGGCTTTGAGGCCCTGTTTCTTTGCTCTGGGCCAAAGTCCTTGTCAGTCTTGtgtaggagtgtgtgtgtgtgtCTGTATGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58842 True 2653 lncRNA 0.48 2 45295503 45298175
TU58844 False 2495 lncRNA 0.47 3 45295503 45354414

Neighbor

gene id symbol gene type direction distance location
AMCG00013840 LOC104957825,LOC107725284 coding upstream 355342 44933300 ~ 44940161 (+)
AMCG00013839 NA coding upstream 376242 44901032 ~ 44919261 (+)
AMCG00013837 NA coding upstream 598732 44695779 ~ 44696771 (+)
AMCG00013834 NA coding upstream 633865 44635479 ~ 44661638 (+)
AMCG00013833 kcnd3,LOC101073956,LOC102776651,LOC102303593 coding upstream 764676 44529718 ~ 44530827 (+)
AMCG00013849 kif21b coding downstream 65499 45419913 ~ 45431617 (+)
AMCG00013848 LOC106582687 coding downstream 88672 45443086 ~ 45456185 (+)
AMCG00013851 LOC101073987,LOC107714485,LOC106582685,LOC105898132 coding downstream 136323 45490737 ~ 45494667 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding downstream 197559 45551973 ~ 45569316 (+)
AMCG00013854 gstm3,LOC106946564,LOC103151067,LOC106525860,LOC105931784,LOC103467185 coding downstream 244309 45598723 ~ 45602192 (+)
G47192 NA non-coding upstream 2603 45291273 ~ 45292900 (+)
G47190 NA non-coding upstream 8650 45286516 ~ 45286853 (+)
G47189 NA non-coding upstream 11344 45283840 ~ 45284159 (+)
G47188 NA non-coding upstream 11903 45283392 ~ 45283600 (+)
G47186 NA non-coding upstream 14408 45279754 ~ 45281095 (+)
G47232 NA non-coding downstream 214995 45569409 ~ 45574313 (+)
G47255 atp5f1,LOC107679218,LOC107731279,LOC107711984 non-coding downstream 261719 45616133 ~ 45620232 (+)
G47258 NA non-coding downstream 268173 45622587 ~ 45622806 (+)
G47262 NA non-coding downstream 269958 45624372 ~ 45624571 (+)
G47264 irf6 non-coding downstream 285450 45639864 ~ 45641637 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 199834 45034772 ~ 45095669 (+)
G46945 NA other upstream 1854805 43438492 ~ 43440698 (+)
G46862 NA other upstream 2205860 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2251067 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 2633659 42650190 ~ 42661844 (+)
AMCG00013872 NA other downstream 461958 45816372 ~ 45823228 (+)
G47398 NA other downstream 580245 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 589157 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1682681 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1865505 47219919 ~ 47227969 (+)

Expression


Co-expression Network