G47255 (atp5f1,LOC107679218,LOC107731279,LOC107711984)


Basic Information

Item Value
gene id G47255
gene name atp5f1,LOC107679218,LOC107731279,LOC107711984
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45616133 ~ 45620232 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58917
TATCACCCACAATGCCTTGCAGGAAGTGGCAAGAAACACATACCAGTAAATCCAATATTATGTCATATTTAATGGCAAAATACACAGCCTTCGTACATATGACAGACTGGGAACCATTTCCTCCTTCGTATTGCCAACACAGAGTTCACAGTCCTGCGATTATCAACGATGTTCCGAGccaatgtgtttaattaagacTGGCCgaaattatgaaatatgaaCACTGTGTCAGGAAGTTCGCCAGACGGATGAATCTGCTCCAGTCCGCGCTGCAGTTTGttctgtgaagaaaataaaacgcagattcctctctctatatataacatGATGAGAAATAAAACAGCCGATAAGaggaaatagtttatttataatgaaacacGGATATCGGCGCAGACACACAagcggggcgggggggtgtCTGACGGTGGGGGACATCTGGGGCCACAGCGAGGCGCTTCATCAGACAGTGGCTCTGGCCTGCATGTTCTTGGCCAGCACTTTGAGGTCTGTGATGCACTTGGCGATGCTCTCCTTCTCCTGCGAAACACACGAGAACAAATCACACCGATGCTGCGTTTTCCTTTTCCGAGATCACAAACATGAGTGACGATCCTATAGGACAGTTCTgagccctggccctggaggagcccTGCCCTGCTGCATTaggttccaactgagctcttaattacttaattggaccctgaatttaagtaataatctgcttagatttgacggtaagaaaagtttatttaataagttctttatagaATTCTATACTTAACAAAACCTCTagttaaaacaatgaaaaggttccgatttcagaaataatgtaattaaggttcaaataagtaattgagaacACATCCTGGCCATTGAATGATGCACAGCCCATAACAGGAGACTGATTAAATCGGTGTATACAGATTAAGTGCCAACTGGTGTGGGGACAGGGGGCTCCGTACCTGCTGGGGGGTGATGCTCTTGACCACGCTCTTCTCCACCCAGCTGACCATGTGCTCCTGCGCCAGGCGCCGCTGCAGGTGCTGCATGGCCACCTGGTAGTCCAGGCGCTTCTTCACCTCGTTGGTGACCATGTGCAGCCGCTCCCTGTAGTTGGTCTCCAGCAGCATCGCCACGTTCCTCTTGGCGTCGAAGAGCATCTGCCGGCCCTCGGCCCTCCACTgctccttcctctcctcctcgaTGGCCTGCTGCAGGCTGTTGAGAGCCAGGTCCTTGACCTCCTGCGCCTTGGCCACCTTCTCCTGCAACCACAGTCACCCCCCCACAGCAGTGAGAAACACACAGCAAGCCACTCCCATCTTCCTCCCGAGTGGGTTTGGGTTTTCATTCGTTGCGATTCTTTACTAGGACTTTCACGTCCACTAGCGGTTCTCTCTCGCTCTACTTCTATCATCACAAGAACCCCCGTTCCTGCACTTACTCCCTTGTACAGAGCACCCCCTAGTGGGTGGAGTCAGAATGAGTAACTGGTTTTACCAAACCTAACAAAAAACGATTTCCCTGCTCCCTTTCAGCACCGCCTTCTGCCACAGGTCCCACGCAATCgtcacaaaacaaaacgaacCTCATTCAGCTTGTCAGCGAATTCTGCAACTTTGGGGCCGAAGTTCTTGATGCCGTAGAGGATGACGACACCGATGGTGGCTGCGGCGATGGTCTCGTGGTTCACGATGTAGACCTCCTTAGACAGCAGGTAGAGCAGGAGGCCCGTGCCCAGCATGTAGGGCCCTGCAGGGCAGAGGACACAAACATGCA
>TU58920
TATCACCCACAATGCCTTGCAGGAAGTGGCAAGAAACACATACCAGTAAATCCAATATTATGTCATATTTAATGGCAAAATACACAGCCTTCGTACATATGACAGACTGGGAACCATTTCCTCCTTCGTATTGCCAACACAGAGTTCACAGTCCTGCGATTATCAACGATGTTCCGAGccaatgtgtttaattaagacTGGCCgaaattatgaaatatgaaCACTGTGTCAGGAAGTTCGCCAGACGGATGAATCTGCTCCAGTCCGCGCTGCAGTTTGttctgtgaagaaaataaaacgcagattcctctctctatatataacatGATGAGAAATAAAACAGCCGATAAGaggaaatagtttatttataatgaaacacGGATATCGGCGCAGACACACAagcggggcgggggggtgtCTGACGGTGGGGGACATCTGGGGCCACAGCGAGGCGCTTCATCAGACAGTGGCTCTGGCCTGCATGTTCTTGGCCAGCACTTTGAGGTCTGTGATGCACTTGGCGATGCTCTCCTTCTCCTGCTGGGGGGTGATGCTCTTGACCACGCTCTTCTCCACCCAGCTGACCATGTGCTCCTGCGCCAGGCGCCGCTGCAGGTGCTGCATGGCCACCTGGTAGTCCAGGCGCTTCTTCACCTCGTTGGTGACCATGTGCAGCCGCTCCCTGTAGTTGGTCTCCAGCAGCATCGCCACGTTGTTCTGGGGGAGAGACGCACGACAGCGTCAACACAGGAGCGAATCAAACTGCTTCCCGTCTGAGACTGCAGCCTGCCCCACGTGTCCGTCAGATGCGAAAATCCGCCGAGGATTGTTCAGACTTTCGAAAATGACAGCAGGGCATTGGAGGCAGAAAGCTGCATCTCAGGACGATCTTTTATTGGTGTAGGACGGGAATAAagtaagtttattatttcatgtatGTAAATTATTGTGTCTGTGTCATAGATGAGAATTCGGTCCTGCTGTGTTCTGAGGCTCATTTACTTTGATTGCTGTTTTGCACGATCACAGAGGCTTGTAAAGTGTGACTTAGAaattttacaacaaaaaaattatttgaatgcTATGGGCACGTTCCGTTTGTGTCCATAACATTCTAatttttattccatttgttCTAGATTCTTTCCCTCGTGTTCTATTGAAGTTCAGCTATAAATCAGAGTAAGAGTTCTCAACTAATAAATATCACTTTTTGGGAAAACATAcgagtttatttttatgatttttgaTCTCTGAAATACAAATCGAGTCTGAGGATGTAAGGGATGATGAGGATTGATCTGATGTTTATGTCATTTACCATTGTGGAGATTTATGCACTAGAGGTGGACCGATTAATCGGGGCCgataacagctttttgaaaCGGCAAAAATGAACGCCGATAATGGCCATGACTTGGCTCAGCACGCAGACTCTGATGCTCACTTAACAACTTCGGCTGAGAGAAGAGGTGCGCATACGAGTTgtcaaacattgaaaacaaacacaaaaggaagGTACTTTGTTTACAAATGTGGCAGTATTAAAAATAGCTAATTAGCACTGATATTCCGCAAATATTTTAGAGCTTTCAGACAGCAACATTTAACCACTGGATTATTTTTTCTACCAATTAAAAACTCCATTTCCACTGGGATTATATAATTGATTTGATCGGGAAGTacagtaaatattatttatgtccaCTAAGTTGTTTAGTAGTGAAGAATAACTTGATTGTACACTCAGAGCAGTGTGGGCATTTAAATCagggcattacatttttttttttaacatttcaatctTTTCTAATTCAagttatttgtcttttatttgtagattCGTATTTCTGTATATGAACCTGTTcgtttctattatttattttgaattgtatttgtgtgtgtaaatcaaGTGCGTGGATTACAAACATTGATCCTTTGTGTACACTGTGATGCACTACATTATTCCAGAATTGTTTTCTAATGTTTCCTTGCTAATCTGGTTGTAAAATAACAGCAGCCACTGCCTGTATTACTAGTAAATGCGACgtgaaaatctataaataaaagtactaTAATGCGTAGTGCAGTCTcgtgtttatttcatgtttccatctacatgcatttttttgAGAAATAAGGAAGCACTTCTACATGCGCCGTGCCTGAGCCAGTGTGAGCGGCGGGTCAGTCAGGTGAGCAGCAGCTCAGCCCTCAGGCCAACGCTGACCACAGCTCTGAGCCTCTCATCTACACTTTCTACAGCTAGCAGTTatatctgaaaataagtaaagtacCCAACATTTGTTATTACTGGCATTTcatatttgtagtttattttcagcaaTTATCTAAAGAGAGTAATGTTGAATTAATGCTGCAGAATTTTGActtaatttttcatttatttgaatggatctattttatatttattttatactattttTTAGTTCTTACTGTAATTTCTTTTGATAATAAAGTTCATAATATATAGCACTCAAATAATAAATtga

Function

symbol description
atp5f1 F-type H+-transporting ATPase subunit b

NR:

description
PREDICTED: ATP synthase F(0) complex subunit B1, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58917 False 1779 lncRNA 0.50 2 45616133 45620232
TU58920 True 2513 lncRNA 0.40 2 45616133 45619070

Neighbor

gene id symbol gene type direction distance location
AMCG00013854 gstm3,LOC106946564,LOC103151067,LOC106525860,LOC105931784,LOC103467185 coding upstream 13941 45598723 ~ 45602192 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding upstream 46817 45551973 ~ 45569316 (+)
AMCG00013851 LOC101073987,LOC107714485,LOC106582685,LOC105898132 coding upstream 121466 45490737 ~ 45494667 (+)
AMCG00013848 LOC106582687 coding upstream 159948 45443086 ~ 45456185 (+)
AMCG00013849 kif21b coding upstream 184516 45419913 ~ 45431617 (+)
AMCG00013853 NA coding downstream 8155 45628387 ~ 45633476 (+)
AMCG00013855 NA coding downstream 14880 45635112 ~ 45636569 (+)
AMCG00013852 guca1b,LOC107562461,LOC107657012 coding downstream 33121 45653353 ~ 45656372 (+)
AMCG00013862 NA coding downstream 61848 45682080 ~ 45695028 (+)
AMCG00013863 NA coding downstream 99988 45720220 ~ 45740542 (+)
G47232 NA non-coding upstream 41820 45569409 ~ 45574313 (+)
G47194 NA non-coding upstream 261719 45295503 ~ 45354414 (+)
G47192 NA non-coding upstream 323233 45291273 ~ 45292900 (+)
G47190 NA non-coding upstream 329280 45286516 ~ 45286853 (+)
G47189 NA non-coding upstream 331974 45283840 ~ 45284159 (+)
G47258 NA non-coding downstream 2355 45622587 ~ 45622806 (+)
G47262 NA non-coding downstream 4140 45624372 ~ 45624571 (+)
G47264 irf6 non-coding downstream 19632 45639864 ~ 45641637 (+)
G47320 NA non-coding downstream 161794 45782026 ~ 45800423 (+)
G47336 NA non-coding downstream 206080 45826312 ~ 45826652 (+)
G47206 NA other upstream 255251 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 520464 45034772 ~ 45095669 (+)
G46945 NA other upstream 2175435 43438492 ~ 43440698 (+)
G46862 NA other upstream 2526490 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2571697 43039984 ~ 43044436 (+)
AMCG00013872 NA other downstream 196140 45816372 ~ 45823228 (+)
G47398 NA other downstream 314427 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 323339 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1416863 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1599687 47219919 ~ 47227969 (+)

Expression


Co-expression Network