G47258


Basic Information

Item Value
gene id G47258
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45622587 ~ 45622806 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58924
cagttcAATACATAACACATAATAATATATCACTTGTGAGAACTTATAGATGCCGTAGTGAGCTAACATGTACAGGGAGACCAGGGATTTGTTTTAAGTCTTGTTTCTGAGGCCACTGTGACATGCCATTGCGTAACACGATCGCCAAATGAATCATCAGGACCTGGGGTAGGGGGGGATTGTGTGCGGGCCCTTCTCCCCCCATCGTCTCTTCTGCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58924 True 220 lncRNA 0.47 1 45622587 45622806

Neighbor

gene id symbol gene type direction distance location
AMCG00013854 gstm3,LOC106946564,LOC103151067,LOC106525860,LOC105931784,LOC103467185 coding upstream 20395 45598723 ~ 45602192 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding upstream 53271 45551973 ~ 45569316 (+)
AMCG00013851 LOC101073987,LOC107714485,LOC106582685,LOC105898132 coding upstream 127920 45490737 ~ 45494667 (+)
AMCG00013848 LOC106582687 coding upstream 166402 45443086 ~ 45456185 (+)
AMCG00013849 kif21b coding upstream 190970 45419913 ~ 45431617 (+)
AMCG00013853 NA coding downstream 5581 45628387 ~ 45633476 (+)
AMCG00013855 NA coding downstream 12306 45635112 ~ 45636569 (+)
AMCG00013852 guca1b,LOC107562461,LOC107657012 coding downstream 30547 45653353 ~ 45656372 (+)
AMCG00013862 NA coding downstream 59274 45682080 ~ 45695028 (+)
AMCG00013863 NA coding downstream 97414 45720220 ~ 45740542 (+)
G47255 atp5f1,LOC107679218,LOC107731279,LOC107711984 non-coding upstream 2355 45616133 ~ 45620232 (+)
G47232 NA non-coding upstream 48274 45569409 ~ 45574313 (+)
G47194 NA non-coding upstream 268173 45295503 ~ 45354414 (+)
G47192 NA non-coding upstream 329687 45291273 ~ 45292900 (+)
G47190 NA non-coding upstream 335734 45286516 ~ 45286853 (+)
G47262 NA non-coding downstream 1566 45624372 ~ 45624571 (+)
G47264 irf6 non-coding downstream 17058 45639864 ~ 45641637 (+)
G47320 NA non-coding downstream 159220 45782026 ~ 45800423 (+)
G47336 NA non-coding downstream 203506 45826312 ~ 45826652 (+)
G47322 NA non-coding downstream 228289 45851095 ~ 45854769 (+)
G47206 NA other upstream 261705 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 526918 45034772 ~ 45095669 (+)
G46945 NA other upstream 2181889 43438492 ~ 43440698 (+)
G46862 NA other upstream 2532944 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2578151 43039984 ~ 43044436 (+)
AMCG00013872 NA other downstream 193566 45816372 ~ 45823228 (+)
G47398 NA other downstream 311853 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 320765 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1414289 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1597113 47219919 ~ 47227969 (+)

Expression


Co-expression Network