G47264 (irf6)


Basic Information

Item Value
gene id G47264
gene name irf6
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45639864 ~ 45641637 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58933
TCTCTTATCTTTACAAAAAGGTTTACTCAACAGGCTATAATATAATAGAATAACAGAATATAATAGAACACATAATCAATCCCCAGAGAAACACAGCGAGCGCCACATTATAAGATACCTGGCCAATGTACAAGAGTCCACAAATTGAACTCACAATGTCATTATCGAATATCATGAACACCACCTACTCCACTACAGCAGAAATTACACCTAGAAATAGTTGGGggccaaaacaaatgtgttatcaCATAACATGTGCTAGTGGATCACACCTCAGACTGTGCTCTGCAAAAGCCAGGTGTTCGAGAGGGATAGCACTGAACCCATTCCATGGCCTATTCAGAGTCTGGACCTCAATCTCtcagaacacctctgggatcaACTGGAACAGCCAATCGTGAAGACCCCTAAACCATAGCATGGTTGCATTGCAGAAGTCACTGAGGGTAACAGTGGGTCGACACCCTTTCAAATACACCAAACAGCTGCCTTTTTGTACTTGTCTGTTGACAAAATGGATTTGGTTATATAGGGCCTGATTTTTCAAAGTAAAGAATTTGCAAATGACTACagtcagtatgtgtgtatgcatgatTATTAGCGTTAGCGTAACATCCATGTCACTCAAAATGCTTGATAAGAGGCCccataagtaaataaactttATTCAAACTGTGGATCTCACTTATTAGTATGTTTACCAACCCTGGAAAACCAGGCCCATAATGTACATTGGCAGGATTTATCACCAtaacaaaaactacaataataatacaaattattatcaTCAATTGTAGTCATACAGAGACTGTCTCATGATAAAAAACAATCAGGTACAGTACATACTTTgggattacaaaaaataaaataaaatcacatctCTTGGTTCAACACCATGTCCTGCCCACTATAAACCCGACTCCGTCCTCTGCTCAAGGGGTACAGCCACATGTTTTGCTACATCTCACAAAAAAAATACGTTGCAGAAAATGATATAAAAGAAAGGACTTCATATTGTTGTATCAAAAGAGAAATTTAAGCAACAAATTCACTATACATTCTCTGGACATACATCAATCGCCCCAAGAGGGGAAAACAAcggttataatttaaaaacactcgAGTTCTAAAGCATTTGAGGGAAACTGAAAGGTTGGTaactatttaaaagtattttaaaaacatccagCTgcatgtctgtctctgtgtcggTCTAACCGAGCTACATgaatgcatgtatgcatgtatgtatgtatgtatgtatgtatcagtGCTCTCCCGTATACGACTGTGGTTGGTTATGACCACTCAGATTTTTCATCAATCTGCTCTTCCCCTccgtcagtctgtctgtctgtccctcacCTCTACACCTGGACGTCACTGGTTTAAGcctgttttgtctgtgtgtgtgtgtgtgttggggaaTTGCTCATTGGCGGAAGGGGAACTGTCAGTTCGTGGGTCAGTGAGGGCGCTACTGTGCGTGCAGGGCCTGGGACAGGTGCACGTTGGCCTGAGGGGGCAGCCAACCGTCGTGGGGCTGGTGTGTTTGTAGGAGGCGGTACAGCTGCTTCAGGTGCGCCACGATGTTGTCCTTGATGTCAGGCGTAGAGATCTGCAGGCGCACACTGCCGCTGTCGAAGGAGCGCGTGAAGTCGCCGGAGAACATCTCGTAGATCATGCGGGCCACCACGGGA

Function

symbol description
irf6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in epidermis development. Acts upstream of or within embryonic neurocranium morphogenesis and epithelium development. Predicted to be active in nucleus. Is expressed in several structures, including blastoderm; digestive system; forerunner cell group; head; and sensory system. Human ortholog(s) of this gene implicated in several diseases, including Van der Woude syndrome; cleft lip; orofacial cleft 6; popliteal pterygium syndrome; and syndactyly. Orthologous to human IRF6 (interferon regulatory factor 6).

NR:

description
PREDICTED: interferon regulatory factor 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58933 True 1700 lncRNA 0.43 2 45639864 45641637

Neighbor

gene id symbol gene type direction distance location
AMCG00013855 NA coding upstream 3295 45635112 ~ 45636569 (+)
AMCG00013853 NA coding upstream 6388 45628387 ~ 45633476 (+)
AMCG00013854 gstm3,LOC106946564,LOC103151067,LOC106525860,LOC105931784,LOC103467185 coding upstream 37672 45598723 ~ 45602192 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding upstream 70548 45551973 ~ 45569316 (+)
AMCG00013851 LOC101073987,LOC107714485,LOC106582685,LOC105898132 coding upstream 145197 45490737 ~ 45494667 (+)
AMCG00013852 guca1b,LOC107562461,LOC107657012 coding downstream 11716 45653353 ~ 45656372 (+)
AMCG00013862 NA coding downstream 40443 45682080 ~ 45695028 (+)
AMCG00013863 NA coding downstream 78583 45720220 ~ 45740542 (+)
AMCG00013873 NA coding downstream 151898 45793535 ~ 45798941 (+)
AMCG00013869 NA coding downstream 159281 45800918 ~ 45802811 (+)
G47262 NA non-coding upstream 15293 45624372 ~ 45624571 (+)
G47258 NA non-coding upstream 17058 45622587 ~ 45622806 (+)
G47255 atp5f1,LOC107679218,LOC107731279,LOC107711984 non-coding upstream 19632 45616133 ~ 45620232 (+)
G47232 NA non-coding upstream 65551 45569409 ~ 45574313 (+)
G47194 NA non-coding upstream 285450 45295503 ~ 45354414 (+)
G47320 NA non-coding downstream 140389 45782026 ~ 45800423 (+)
G47336 NA non-coding downstream 184675 45826312 ~ 45826652 (+)
G47322 NA non-coding downstream 209458 45851095 ~ 45854769 (+)
G47383 NA non-coding downstream 260230 45901867 ~ 45903185 (+)
G47387 NA non-coding downstream 264465 45906102 ~ 45906399 (+)
G47206 NA other upstream 278982 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 544195 45034772 ~ 45095669 (+)
G46945 NA other upstream 2199166 43438492 ~ 43440698 (+)
G46862 NA other upstream 2550221 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2595428 43039984 ~ 43044436 (+)
AMCG00013872 NA other downstream 174735 45816372 ~ 45823228 (+)
G47398 NA other downstream 293022 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 301934 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1395458 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1578282 47219919 ~ 47227969 (+)

Expression


Co-expression Network