G47365


Basic Information

Item Value
gene id G47365
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45845849 ~ 45854800 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59058
AGCTGTTACAACAAATTTTATTTTGGTGTCATCAACCTGATTAAGCACTAATGGACAGTACAGTTTAGGGcagaggatatatatatatatatatatctatatatatatatacacacacagtataagAATGTATTGGTTTTATTCTTTTCATAGTTTTGTCATCTAGAAacttttcccccccaaaaaagaaacaaacaatatagaTAGTTCAATTtcttcttacaaaaaaaaaaaaaatctacattaaaagattctggaaaacacaaataacatgtAATTAACTCTACAATACACAACACCACCATGGCCCGATACCCTACACCCCCAAGCGcaggtttgattttattttttataaagaaattttcaaaaaaatatatgcctTCCCTTCTGTGAGGGGTGACTGACTCTTGAGATTTTATAAcctaaacataaaacacaaatatacatcaaGGAGTTTTCAAAGCAGACTTTTCACAGTAATTCACAAGTTAGTGCTGCTGGGGGGGGGCGATATACCAAATACATTTCCACTTCAGTGCTGGCTCTGTCAGCATGTATTAAAGTGTTGCACTAGAGAGAAGGGCACACTTGTACCCTGTCCTGGCTCATTAATTGCCATTTATACTTCATATACAGTGTCTTGTGGATTTACCAGTGCATTACGCATTTTACAGGCAAAGGACAGAAGGAATTCAATGCAAATCATTTTCCCCTCAGTCATTTTCTAGACATCTAAGggattcttattttttctgaaaggTGAGGATCAAGGGGTTTCTTCACCGGACAAGAGCACGACGGACAGACTATGCTCTTCAATTCAGGTCTAGATTTCAGAATATAGGACCTGTGCCATACAGTGCAGATCTGCTGCGATGGGTAGAAGCCAAATTGTACACTTTCCCAGGCCAGCTGCCTCCTGGTGTGTGAATGGCAAGAGAAATGCGACGTTTTCACAAAACTTTTGTCATTTTGGATTTTTGTGGTCGGGAGTAGTTTAGTCAAATATGAAGACAAAGGGTTTGTAGCAGGTAAATAACTCAACAAACATATTCTGAAGGTTTGATACCttatacagaaaacattaaataaataataataaaaaagcaaattcaTATGTACTGTATAGTCTATTGAATGGAGGATGAAAATTACCCATTCATTCCAACTGTGTGGAATCAATCTGCAGTTTCAATGCAAACAATTGTGTTTCTAGTCAAGGGAATCAAAAAGCAATAGCGTTGTATAGCAATAGCAATACAccaactgctttatttttaattatgttttcccCTCACATCTGAAACTGGGTTATTGTTGTGAAgtggttataaaaaaaaaaaacctttttttaatgcatctttCCCTTGAACTTGTTATAGAGGAGACTGatgcaacttttttttcttcatttgaaaatatctattttttgtttttatatagatttacataaaaaaacacgtTNTCTCCTCATTCCCTCCACTAATAAAGAAGGCTAGCAGGCTGGCGCTTAGGACACAGTTAGTCTCTGCGCTGCCAGAGGATTTTCAATGGGCTTTTCACTTCTCCTACCATCGTTGCATTGAatacgtttattttaaagtacagaTTAATGACCAAGATTAACTGGGTCAGATCAGTCTGCTACTCAAAACCTATTTGATTGGAAGTACCATGAGAATGGGACTCCTGGCAAACAGGACTTGGTTACGTTGTAAATATTGGGTGACTGGCTCATGGATCCTTGGTCTAAAAAAGGATTCAGAAGGCTAGAGAGATAAACCCTGAAACAGGTCTGCCTGAGGGCTCATCTGTGAGGCCAAATATACTTCACAGCAACTAGGGGACTTTACATATACATGGGTAATGTTCTTATATAggacacacacatatttagaTGCACATATTGTGGCAAAGGAGGTGCACCAGCTGGGAACTGGTACCTTGTGCTGTATTCAGGATGGGGGGAGCAGTGCACAGTACTTGTAATGAGGACACaagataaacaatacaaaataaacccaGCATCACAAGACAGGGAATCTGCTCTGCTCAGCCCAGTTCAGTAGTACTGCTTCATTAGTGGAGGCCATCGCACACGGGATCCCTGCACGGTCACGGCTGCTCGGCCATGCGCTCATGCGCAGCACATGTACATGCCAATGTATCTGCATGAAGCAGGGTTGGAGGCACTaccaccacccccaccagcACTGTATATCCTGCAGTGGTTTTAATGGTGATTGCAGGACAACATGAAAAGCCATTACTGTCAAGCAGGTTTCTTTTTTCACTCCCGTGTCATGCAAGGCAGCCATGATCATCGGGTCTATGTTTTTGATAGGGTATCAGCTGGATCCAGTATGCGACCGCCGAGAGGAGCAGGGCGCTCTGCTTTGGGCGTTGAGGTCACACCGAGAGTCTGAGAAGAGGCCACCTACCTATGAGCCGGCGAACCAGAGCCCCTACCTGATGCAATTGGTGCAGTGCGGTGCATGGCGAGGTTTAAACCCGAGGTCCGGTCTGCTTTGAAGGCTATGGAGATCCTTCTAGCACGTGTTAGAAGGCACAGAGGTTGTGAGCGAGAGGTTCAGGTTTGCTCCAGCCCCTTAAACTGCCATTGAACGCGTTTGAGATGAAGGCGATTCGCGAACGAAAGCGACGAAACCTGCTGACCGTGAAACGAGCCGAGGCGCTTTCGCTGCATAATGTGACGGTCTGCTTTCGCGGTTAGATAGCCTCTTGTTTTTCCATGAAGGGACCTAACCATTTTGCCAGGGAGATGTCAAACCTACCTCAGCAAGTGCTGGGATAGATTAACAACTTGCTGTGATACCATCATGACTACTGCAACAGGGAGTGATAATGAcaatttttgatttaatgtgaTGGAGTGTATTTGGAAGAAACTGGACAATAAATCATTACATCCAGTAAAAAAAAGCCGAGATCTGTGCCGAGATCtcatataaacaaacatctACACAAATGACTAGCACTATCCCAAAGAATaggagctaggactcctgcTAAACTTTTCCTGGGGATTTGACTGAACACTCCCTAGAAGAGGCAGGTTTTCACTTCCTTAACAAGCAGTTAAAATCCCTTCGGACAAAACAGGGAGCCACTAACCTTAAGACCAGGCCACCACATTGTGCGGTGAAAACACTTAAACCTGGTTCACGGTTGACAGGCTACCATAAGCTTCAGTCCCGAATAGCTTTCGTCCTAAACGTAATCAATTACAATTTAACAGGAGAGAGGGAACGCTGAACTTTTCACTCATTCCCTGAACCCCAACAAAggcattatatatttaatgcgttttgttaattttaattctaCATTAGCAAAAAGCACACGGACACTTAAAATGTGAACAGTTGCCTTTCACTGCAAGGAATATGGTTTTCAATACAAGGtcacaaaaaagacaaatgcaatGCTCCTCAAGGCTGTTGTACAGGAATTACATTAGTAATATCAGGAATTGTAATGAACATTGAGACCGATTCTTGCtcactcaaaatacatttacaaaataaactgtgtatgTTATAACATGTAGctttactaggatctaatttacagctcaaagaataaaaaaaaaatacaatataaaaaggAGACTATGTTAATTTCTCTGGCAGTTAACACTTTACATGCCAGAAAGaacacattacatttctctaaatttttcacacacacaaacacactaataAAGAGAAAGCAACTCTTTGTCCCCAGAGGACACAACATACCACCATAAACAAGTTTCTTCCAAGAAAGGAATGAATGatatgagaaattaaaaatcacacaaaaattGTGCATCAAATTAGTTACTGGCTATTTTGACGTTCATCCTTCTCTGGGTTTCCTCCTTGTGCATTTATGTAACAATGGaagctgctgtgtgttgtttattatatatattttcctttcccCTGGGGTTCCACCTGGTAAGACACTCAACTGCACTTACCTCCCGAAGGATCCCGTACATGGTCCTCCGGCTCACAGGAGCTTGCAGGATTATCTTCGGCTCAGACTTGGATTTCCGCTCTTCGATTGCCAGGAAGAAAGCTGCCATTTCTCCCTTTTCAAACTACTGTCCAGGAAATGTCCTCCTTAAACCTGCCCAGAAACCTTGTTCTCGGTTGTGTATCTACTATTACAATATTGCGATAGCTTGTTTCGTTAACCCCTTCCCCCGtcaaaatacatcaaatttGTACATCCCtgtatcaaattaaatcagtccATACAAAACTATGCGATGAAGGAAACCCGATGAACAGTCTTATGAAGGCATCAGCCAAATAAGAATAAATGAACGATTGAAAGCCTCTAAGGAAGCTACAATATACAAGTCCAATCGGCCTCCtaccctggttctggagagcaCAAATCCTTCAGATTTTTAAAGCTCTTTCCAGTCTATTAAATGGATCTTGACTAAGTCAGGATTGGGTTCAATTAGATTACTGAAAACCAGATTCCCTCCAGGTCTAGGGTCAAGAGAGCCCAGTTTTGCACATGGTCGAGAACAAACGGACAGGTGGAAATGCTGATCATCAAATGCACCTGCCTGATAATCtccttaaatatgtattgaaatacacactcactcacgcaGTCACAAGTGAATTTTAAATCAAGGCATCTTGGGcatcactgtcacacacacaaacataccatcctatgcaataataaaattaaaataaagactcCTGCATGTGCCCGACCCGTTCAAGAAGTTTGAAACTATCGGAATACTGTAAGGGCTTCAAGTATCAGTTTTCACCAACGTCATTTTATTGCCAGAAAACTGATTCCGGGATCTTTTCATCAACTGGATTCCAATTCAACTCCTCCTGGCTCTACAACTAGTATTATAAATAAGCTGAAACAGTGCTATGCTAAGCAAATCATACTAAGTGCCAAAAAAGGGTCTGGAACTGGGAACACAAGGGAAGTACTGCAAGGAATCTCAAAGAGCTGGActagcatgaaaaaaaaaacgaaaaaactaaaagtacaACTGTCAAAATCCACTATAGACAACTCTGCCACATAACACTCCTTTATTTTAACTATACAGCTCCAGAATCACGTAGCCATCCAGTCATAAGCCTGTCCTATATGCACACTACCGAGTTTATCAGCGCCAGCACTGCAAGACCGGACCTACACACATGACGGAATCGAGCTAAACGAGTGGGAATCTGGCAGCCATTTTAGCATTAGCTTGGCAAATTGATCCCTTTAGGTCTGCCTCCACCTGCGCGATTCCGGACTTCGGACTAAGTTCCCCAAAATCTCTGCACATTATActtataaatatagatatttatatagCGTTTATTCCAAAATCCCGCCAGTACCTCGATCTATGTTCCGCGATTTTATCTACCAGGCTAGTACCCGTGAAACCCGAACCCGTATCCCGCCACTGTTTGGAAACGCTGCCCCATCGGGCtatctgtgtgtgactgtgcatGTGTCGGGTCTGGTCTGCAAGCAGAGTCAGCGCGTCTGCAGGGAGAGAAACCCACCTGATGTAGTCACCATTGGGGTCCGTCCGGCGCCCGAAGCTCACGGGACAGTAGCAGTGGAAGAACTGCTGGAAGAAGGAACTGCAGGACAACCACATCCAGCTGCCGGCATTCACACTCCAGTCTGCGTCTAACAGCAGCTCCTCGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59058 True 5711 lncRNA 0.42 2 45845849 45854800

Neighbor

gene id symbol gene type direction distance location
AMCG00013877 NA coding downstream 14408 45823117 ~ 45831441 (-)
AMCG00013874 rbbp5,LOC106583489 coding downstream 29155 45807005 ~ 45816694 (-)
AMCG00013875 NA coding downstream 39516 45805431 ~ 45806333 (-)
AMCG00013865 NA coding downstream 61025 45783866 ~ 45784824 (-)
AMCG00013866 NA coding downstream 93261 45743779 ~ 45752588 (-)
AMCG00013876 LOC105900578,LOC105920322 coding upstream 2666 45857466 ~ 45859867 (-)
AMCG00013887 cept1,LOC105013905 coding upstream 124306 45979106 ~ 45991807 (-)
AMCG00013886 kctd20,LOC106572174 coding upstream 154304 46009104 ~ 46023024 (-)
AMCG00013889 mtch1,LOC106572175,LOC106566941 coding upstream 173615 46028415 ~ 46038881 (-)
AMCG00013888 NA coding upstream 195793 46050593 ~ 46074428 (-)
G47359 NA non-coding downstream 17598 45827965 ~ 45828251 (-)
G47358 NA non-coding downstream 19195 45825723 ~ 45826654 (-)
G47259 NA non-coding downstream 223094 45622515 ~ 45622755 (-)
G47185 NA non-coding downstream 577453 45268054 ~ 45268396 (-)
G47180 NA non-coding downstream 740962 45104223 ~ 45104887 (-)
G47391 NA non-coding upstream 66306 45921106 ~ 45922914 (-)
G47538 NA non-coding upstream 376525 46231325 ~ 46238514 (-)
G47661 NA non-coding upstream 948811 46803611 ~ 46838764 (-)
G47718 NA non-coding upstream 1202739 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 1216543 47071343 ~ 47075028 (-)
G47261 NA other downstream 221954 45623238 ~ 45623895 (-)
AMCG00013846 NA other downstream 501834 45338859 ~ 45344015 (-)
AMCG00013820 tmem167b other downstream 2231270 43609282 ~ 43614579 (-)
G46742 NA other downstream 3144781 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 3390091 42428777 ~ 42455758 (-)
AMCG00013882 cry4,LOC108413014 other upstream 64836 45919636 ~ 45928309 (-)
AMCG00013883 NA other upstream 107390 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 220629 46075429 ~ 46083542 (-)
G47501 NA other upstream 305739 46160539 ~ 46163487 (-)
AMCG00013903 NA other upstream 444361 46299161 ~ 46311118 (-)

Expression


Co-expression Network