G47383


Basic Information

Item Value
gene id G47383
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45901867 ~ 45903185 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59087
ACTGAAACTTAACACATTGATCTGAAAACCACACCAGACTGCACTATTGCTGCCAATCGTTTACTATTTGGAGACGGGGGAGGACATTGCCCAGTCTTTCCCTGAAGACAGTGTGACTGAGGGACAGCAAGAGGCAGGAAGTGTGTCTCTGGGCTGCTTGGTTCTGTCCTTTGAAAGAGCTGATGCGTAAGCATTTGGAGGAGATGTTTTGGGTGTCAACACAGGGTTGGACAGCTTCTCAGCACTATGGCCCTGTTCGATagatcctggtcctggagagccacaggggcTTCTGGCTTTGGTTTTATTCAATCCAGCAGTGACCTAATTAATTCTCTAACTGGGCTTACTGCATCAcagttttcaatgttttcagtGATTTGATGATTTAGAGAGTCCTGTACAGTATAGTGAGAGCTCCAGGAACATGGTGGCTCACGCCTCCGATCTCAGTAGAGGGGTCTGAGCCTGGTTTTAACCTCTAGGTTTCCTTTAAGAGTGACTGAAAGCCCATGATTGCTCCCTCATCAAGTCTTGCACTAGTCTAGTTAACGTCTACTGGGTGTCAGACCTCGTGATCCATCACAAAAGAGATGTCTCCTATTTGTTCCTTCAAAGCAGCAACCAAAGAAGAGTGTTTCCATAATGTGACCGTGCAGAAGGAAGCAGACCAGATTTCAGCTCTGTGTTCTGTTAAAATCAGCCGAGCTCTGAGTGAATGGTGTAAAAGTCGTGGAGGCTTACACATCCTAAgatcaaatgcattgtaaatatCTGTATAACTTTCAAAAGCAAGTAAAATGCCTTTTCAGTTACCCAAGCCTTCTCACCCTAATCAACAGTACACTGAACAAACTGATGCACAGAATTGAAAAAAGCAAGACCAttataatgcaaatgtttgatttttattctaaatgcactaaaaaaaatgtttgctttccaCATTCTTCCGTTTTGGTGTATTTTGGACACGTATAGATTTTAAACCAAATTGTGAAACTTGAAAAGCCCTTGAAGAAAGTATGTGCACTATAATGTATTGccttagtttgttttttaatttctctttgttTATACGGTGAAATGCAGaacatgtaatataatatttatacaatgtatttaaaatgtgtagcGAACAAGggaaatgtgactttttttttgttttgttttgttttttctttggttttgcaTATATACAAGAGTGTGTTGCCAAATAAAACTACTTTTGCGCTGTTTGTATTGTGTCGCTTTGGGGAGGTGAAGACCAGAATAAAATCACAGTCCTGGGGTTGAACTCTGAACTGTGACAAACTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59087 True 1319 lncRNA 0.40 1 45901867 45903185

Neighbor

gene id symbol gene type direction distance location
AMCG00013881 NA coding upstream 286 45895147 ~ 45901581 (+)
AMCG00013878 NA coding upstream 7972 45889295 ~ 45893895 (+)
AMCG00013868 NA coding upstream 16554 45878098 ~ 45885313 (+)
AMCG00013870 NA coding upstream 24972 45855452 ~ 45876895 (+)
AMCG00013871 LOC103358259 coding upstream 55731 45833821 ~ 45846136 (+)
AMCG00013880 NA coding downstream 73043 45976228 ~ 45978644 (+)
AMCG00013884 NA coding downstream 90028 45993213 ~ 46005467 (+)
AMCG00013885 NA coding downstream 134208 46037393 ~ 46047122 (+)
AMCG00013895 def6,LOC107757990,LOC107550223,LOC107700524 coding downstream 200803 46103988 ~ 46123681 (+)
AMCG00013894 ppard,LOC100136526,LOC107549971 coding downstream 230441 46133626 ~ 46144604 (+)
G47322 NA non-coding upstream 47098 45851095 ~ 45854769 (+)
G47336 NA non-coding upstream 75215 45826312 ~ 45826652 (+)
G47320 NA non-coding upstream 101444 45782026 ~ 45800423 (+)
G47264 irf6 non-coding upstream 260230 45639864 ~ 45641637 (+)
G47262 NA non-coding upstream 277296 45624372 ~ 45624571 (+)
G47387 NA non-coding downstream 2917 45906102 ~ 45906399 (+)
G47390 NA non-coding downstream 17955 45921140 ~ 45921898 (+)
G47546 NA non-coding downstream 393448 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 515947 46419132 ~ 46470471 (+)
G47669 NA non-coding downstream 1027282 46930467 ~ 46934777 (+)
AMCG00013872 NA other upstream 78639 45816372 ~ 45823228 (+)
G47206 NA other upstream 540985 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 806198 45034772 ~ 45095669 (+)
G46945 NA other upstream 2461169 43438492 ~ 43440698 (+)
G46862 NA other upstream 2812224 43087289 ~ 43089643 (+)
G47398 NA other downstream 31474 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 40386 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1133910 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1316734 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1849029 47752214 ~ 47819723 (+)

Expression


Co-expression Network