G47390


Basic Information

Item Value
gene id G47390
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45921140 ~ 45921898 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59094
ACCTCCATGACCcctttcaataataataaaaacaactacatacaaaataacaagTGCTTCTGTTTTGCAATGTGCGTTTTGTTTAAGAAGCCGGTGAACAAGCTCCATGGAAATGAACAAACACTTCACCTGCTGTTATCAAAACAGTGCTGGAGGCAGTGGGAACACCTTGTCATGAAGCCCGAGGTACAGGCGGTTCCTCGATCGCAGGCTGTGTGAAATCGGTGGCCTTTTTACATCCCTTCATTGGGCTACAATCCATGGCGCTCAACACCATATCACCAAAAGTACCGTGACACACGAGATACAAGAGGCAGCTGCTCACGGGGGCTTCGGCAGCATCCAGACGGACACCTTGGCCTTCATTAGGAACTTCTGTCCTTCAGAAGCGTCTCTCGGGAGTCTCTTCCTGCTTTGCACATGTTTGTTTCTGGCATTGCAAGGTTATTGCATTATTCAGTAAGAACAGACATTCATTGCAGTATTAGTAGAATAATTCCtgccattttaaacacattaaaacactacACTTCACATGGAAGGTgccctttaattaattaatacatctgGGACTtaaaaatttgtattttttggccTCAGTACTGCCTTACGGTTTTACAATCCTCAAAGGTAACATCTGAACAATGGAGCTCAAGGAGTTTCCAGTTTCTCACATTCATTCAGGTTACATACTTTCAATACTTCCTGGAATAAGTCAATAGTTACAATGTGTCTTGCACGACAAGATTTTAAAACAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59094 True 759 lncRNA 0.42 1 45921140 45921898

Neighbor

gene id symbol gene type direction distance location
AMCG00013881 NA coding upstream 19559 45895147 ~ 45901581 (+)
AMCG00013878 NA coding upstream 27245 45889295 ~ 45893895 (+)
AMCG00013868 NA coding upstream 35827 45878098 ~ 45885313 (+)
AMCG00013870 NA coding upstream 44245 45855452 ~ 45876895 (+)
AMCG00013871 LOC103358259 coding upstream 75004 45833821 ~ 45846136 (+)
AMCG00013880 NA coding downstream 54330 45976228 ~ 45978644 (+)
AMCG00013884 NA coding downstream 71315 45993213 ~ 46005467 (+)
AMCG00013885 NA coding downstream 115495 46037393 ~ 46047122 (+)
AMCG00013895 def6,LOC107757990,LOC107550223,LOC107700524 coding downstream 182090 46103988 ~ 46123681 (+)
AMCG00013894 ppard,LOC100136526,LOC107549971 coding downstream 211728 46133626 ~ 46144604 (+)
G47387 NA non-coding upstream 14741 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 17955 45901867 ~ 45903185 (+)
G47322 NA non-coding upstream 66371 45851095 ~ 45854769 (+)
G47336 NA non-coding upstream 94488 45826312 ~ 45826652 (+)
G47320 NA non-coding upstream 120717 45782026 ~ 45800423 (+)
G47546 NA non-coding downstream 374735 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 497234 46419132 ~ 46470471 (+)
G47669 NA non-coding downstream 1008569 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 1047840 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 1053618 46975516 ~ 46976186 (+)
AMCG00013872 NA other upstream 97912 45816372 ~ 45823228 (+)
G47206 NA other upstream 560258 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 825471 45034772 ~ 45095669 (+)
G46945 NA other upstream 2480442 43438492 ~ 43440698 (+)
G46862 NA other upstream 2831497 43087289 ~ 43089643 (+)
G47398 NA other downstream 12761 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 21673 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1115197 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1298021 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1830316 47752214 ~ 47819723 (+)

Expression


Co-expression Network