G47391


Basic Information

Item Value
gene id G47391
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45921106 ~ 45922914 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59095
ATCTACATCTACATATTGAATATATTGACGGTCAACCCTTCTTTATCAGTACTTAGAACTACAAGGACAGTGTTGGACATGACTCTCGAGCAGCAGCCGGGTCACTTGGCCTTAAAGGGCTTGTCTCCCGTCTCTCGGATGTCAGCTTCCTATTGAAGACCTAAatacatctgtctgtctgtagatTTATGTTGCTCTCCGTGGTGTCTGGCGGGACAGGGCAGTTTTAATCTCACTGTCATCTAACTGTGGGGATGGCACTGCCTAATGAAGTTCACACCTGGCAGGATCTGTGACCCTGAATAGCTGATTAAGTTACTCCCTTCTCTTCTCCATCCAGAAATGTGCCGCCCTGCACGAGCACTTTGGTCCAGTCCAGCTTTTACTTTACGATTATAAAGGTTGTGTGGAAGTTCGAAACCACAGTCTTTGAAGTCGAAATTCacgatttttttgttttactaattcAAAGTTGTAGCAGAATGTTTGTCTACCAACCCAGGCACTGGTATGAAGCCGGTCCCTTGTTCAGGCAGGATGGTCCAATTTTATTCTAAGCACGTGCGCTATGTTCGTTTACTTGGGAAGGGGTCAGTTCGGTCCACAGTCGCTGAGTAGGACGATCAACGGGTGTTTATTTTCAGCTCTAACACATTTACAGCCtgtcaattaaatacaattgttaaatattttacgttttaataaaaactgtagcaaaATGATTTTACACTTACACTggcaaataaaaatgcactacATCCACAATTGCATCCGCACctatttaatgctttaaaatcctAATTCGACAGATTGCGCATTTCTGTCGGCTCCGTCACATCCataatgtttataataataataattatttataattacacaAATTACTCCTAGTTAGAGGGGATTACGGATAGATAAGTTGCATATTAAGAGTCCATGGCAGTAATttcagtaattgtatttttaagcgATACATGCAATGTTGGAGACATGGGCATGAATATTGCTTACCATGAGTTACTGTTTTAAAATCTTGTCGTGCAAGACACATTGTAACTATTGACTTATTCCAGGAAGTATTGAAAGTATGTAACCTGAATGAATGTGAGAAACTGGAAACTCCTTGAGCTCCATTGTTCAGATGTTACCTTTGAGGATTGTAAAACCGTAAGGCAGTACTGAggccaaaaaatacaaatttttaAGTCCcagatgtattaattaattaaagggcACCTTCCATGTGAAGTgtagtgttttaatgtgtttaaaatggcaGGAATTATTCTACTAATACTGCAATGAATGTCTGTTCTTACTGAATAATGCAATAACCTTGCAATGCCAGAAACAAACATGTGCAAAGCAGGAAGAGACTCCCGAGAGACGCTTCTGAAGGACAGAAGTTCCTAATGAAGGCCAAGGTGTCCGTCTGGATGCTGCCGAAGCCCCCGTGAGCAGCTGCCTCTTGTATCTCGTGTGTCACGGTACTTTTGGTGATATGGTGTTGAGCGCCATGGATTGTAGCCCAATGAAGGGATGTAAAAAGGCCACCGATTTCACACAGCCTGCGATCGAGGAACCGCCTGTACCTCGGGCTTCATGACAAGGTGTTCCCACTGCCTCCAGCACTGTTTTGATAACAGCAGGTGAAGTGTTTGTTCATTTCCATGGAGCTTGTTCACCGGCTTCTTAAACAAAACGCACATTGCAAAACAGAAGCActtgttattttgtatgtagttgtttttattattattgaaaggGGTCATGGAGGTATTTTGTAAATCTGTATCTCAATAAAatcttgaa
>TU59096
ATCAGTACTTAGAACTACAAGGACAGTGTTGGACATGACTCTCGAGCAGCAGCCGGGTCACTTGGCCTTAAAGGGCTTGTCTCCCGTCTCTCGGATGTCAGCTTCCTATTGAAGACCTAAatacatctgtctgtctgtagatTTATGTTGCTCTCCGTGGTGTCTGGCGGGACAGGGCAGTTTTAATCTCACTGTCATCTAACTGTGGGGATGGCACTGCCTAATGAAGTTCACACCTGGCAGGATCTGTGACCCTGAATAGCTGATTAAGTTACTCCCTTCTCTTCTCCATCCAGAAATGTGCCGCCCTGCACGAGCACTTTGGTCCAGTCCAGCTTTTACTTTACGATTATAAAGGTTGTGTGGAAGTTCGAAACCACAGTCTTTGAAGTCGAAATTCacgatttttttgttttactaattcAAAGTTGTAGCAGAATGTTTGTCTACCAACCCAGGCACTGGTATGAAGCCGGTCCCTTGTTCAGGCAGGATGGTCCAATTTTATTCTAAGCACGTGCGCTATGTTCGTTTACTTGGGAAGGGGTCAGTTCGGTCCACAGTCGCTGAGTAGGACGATCAACGGGTGTTTATTTTCAGCTCTAACACATTTACAGCCtgtcaattaaatacaattgttaaatattttacgttttaataaaaactgtagcaaaATGATTTTACACTTACACTggcaaataaaaatgcactacATCCACAATTGCATCCGCACctatttaatgctttaaaatcctAATTCGACAGATTGCGCATTTCTGTCGGCTCCGTCACATCCataatgtttataataataataattatttataattacacaAATTACTCCTAGTTAGAGGGGATTACGGATAGATAAGTTGCATATTAAGAGTCCATGGCAGTAATttcagtaattgtatttttaagcgATACATGCAATGTTGGAGACATGGGCATGAATATTGCTTACCATGAGTTACTGTTTTAAAATCTTGTCGTGCAAGACACATTGTAACTATTGACTTATTCCAGGAAGTATTGAAAGTATGTAACCTGAATGAATGTGAGAAACTGGAAACTCCTTGAGCTCCATTGTTCAGATGTTACCTTTGAGGATTGTAAAACCGTAAGGCAGTACTGAggccaaaaaatacaaatttttaAGTCCcagatgtattaattaattaaagggcACCTTCCATGTGAAGTgtagtgttttaatgtgtttaaaatggcaGGAATTATTCTACTAATACTGCAATGAATGTCTGTTCTTACTGAATAATGCAATAACCTTGCAATGCCAGAAACAAACATGTGCAAAGCAGGAAGAGACTCCCGAGAGACGCTTCTGAAGGACAGAAGTTCCTAATGAAGGCCAAGGTGTCCGTCTGGATGCTGCCGAAGCCCCCGTGAGCAGCTGCCTCTTGTATCTCGTGTGTCACGGTACTTTTGGTGATATGGTGTTGAGCGCCATGGATTGTAGCCCAATGAAGGGATGTAAAAAGGCCACCGATTTCACACAGCCTGCGATCGAGGAACCGCCTGTACCTCGGGCTTCATGACAAGGTGTTCCCACTGCCTCCAGCACTGTTTTGATAACAGCAGGTGAAGTGTTTGTTCATTTCCATGGAGCTTGTTCACCGGCTTCTTAAACAAAACGCACATTGCAAAACAGAAGCActtgttattttgtatgtagttgtttttattattattgaaaggGGTCATGGAGGTATTTTGTAAATCTGTATCTCAATAAAatcttgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59095 True 1809 lncRNA 0.41 1 45921106 45922914
TU59096 False 1765 lncRNA 0.41 1 45921106 45922870

Neighbor

gene id symbol gene type direction distance location
AMCG00013876 LOC105900578,LOC105920322 coding downstream 61239 45857466 ~ 45859867 (-)
AMCG00013877 NA coding downstream 89665 45823117 ~ 45831441 (-)
AMCG00013874 rbbp5,LOC106583489 coding downstream 104412 45807005 ~ 45816694 (-)
AMCG00013875 NA coding downstream 114773 45805431 ~ 45806333 (-)
AMCG00013865 NA coding downstream 136282 45783866 ~ 45784824 (-)
AMCG00013887 cept1,LOC105013905 coding upstream 56192 45979106 ~ 45991807 (-)
AMCG00013886 kctd20,LOC106572174 coding upstream 86190 46009104 ~ 46023024 (-)
AMCG00013889 mtch1,LOC106572175,LOC106566941 coding upstream 105501 46028415 ~ 46038881 (-)
AMCG00013888 NA coding upstream 127679 46050593 ~ 46074428 (-)
AMCG00013891 NA coding upstream 164169 46087083 ~ 46087778 (-)
G47365 NA non-coding downstream 66306 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 92855 45827965 ~ 45828251 (-)
G47358 NA non-coding downstream 94452 45825723 ~ 45826654 (-)
G47259 NA non-coding downstream 298351 45622515 ~ 45622755 (-)
G47185 NA non-coding downstream 652710 45268054 ~ 45268396 (-)
G47538 NA non-coding upstream 308411 46231325 ~ 46238514 (-)
G47661 NA non-coding upstream 880697 46803611 ~ 46838764 (-)
G47718 NA non-coding upstream 1134625 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 1148429 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 1302887 47225801 ~ 47227254 (-)
G47261 NA other downstream 297211 45623238 ~ 45623895 (-)
AMCG00013846 NA other downstream 577091 45338859 ~ 45344015 (-)
AMCG00013820 tmem167b other downstream 2306527 43609282 ~ 43614579 (-)
G46742 NA other downstream 3220038 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 3465348 42428777 ~ 42455758 (-)
AMCG00013883 NA other upstream 39276 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 152515 46075429 ~ 46083542 (-)
G47501 NA other upstream 237625 46160539 ~ 46163487 (-)
AMCG00013903 NA other upstream 376247 46299161 ~ 46311118 (-)
G47666 NA other upstream 948955 46871869 ~ 46875370 (-)

Expression


Co-expression Network