G47398


Basic Information

Item Value
gene id G47398
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45934659 ~ 45941906 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59106
TCCTCTCGACACACACTGTTCTTCACCACACTGCGTGTTCCACACCAGGGTGGAGAGCTGGCCTGCATTTAGGCTCTGAACACCGTTGCACAGCTTACTGTCAACGTGCAATGTGCTTAACACGGCTTCTTGTGACTTTCCTTTGTTAACCTGAGAAACTCCGACACATCTGCTAGGATTGCAGTAATCAGCATCAACGCAGGCGAGAGAACGGGGACGAGAGAGAATGGCTGGAATGGAGGAGAAAGACAAACAGAGTGCTCCTGCGAGAAGAAGGTGGGGCTTCTCTTCACTGCGGGTCAAGAGAAGAGACCGTCTGGACGATGACACCGGGACCAGCCAGTGGGTGAGGGGGACGAGGAAATTCTACTCCGTCCAAGAGAGATCCACCAAGACAGGAGATAAGGATGCAGCAGAGGGACCGGGCCTGGGAGGAAGGAGACTAAGGACGTTCTCTGCAGGAATGGAGTCTTTAAAGAGTAAGCATGGGGGTTTACGGCGATTATTTGGGTTTCTGCATTCTCCACAGGCCATGGCAGACAGTAATTTGTTCTCCattatcatttgtattattatttgggcCTTT

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG:

id description
ko04950 Maturity onset diabetes of the young

RNA

RNA id representative length rna type GC content exon number start site end site
TU59106 True 586 TUCP 0.51 4 45934659 45941906

Neighbor

gene id symbol gene type direction distance location
AMCG00013881 NA coding upstream 33078 45895147 ~ 45901581 (+)
AMCG00013878 NA coding upstream 40764 45889295 ~ 45893895 (+)
AMCG00013868 NA coding upstream 49346 45878098 ~ 45885313 (+)
AMCG00013870 NA coding upstream 57764 45855452 ~ 45876895 (+)
AMCG00013871 LOC103358259 coding upstream 88523 45833821 ~ 45846136 (+)
AMCG00013880 NA coding downstream 34322 45976228 ~ 45978644 (+)
AMCG00013884 NA coding downstream 51307 45993213 ~ 46005467 (+)
AMCG00013885 NA coding downstream 95487 46037393 ~ 46047122 (+)
AMCG00013895 def6,LOC107757990,LOC107550223,LOC107700524 coding downstream 162082 46103988 ~ 46123681 (+)
AMCG00013894 ppard,LOC100136526,LOC107549971 coding downstream 191720 46133626 ~ 46144604 (+)
G47390 NA non-coding upstream 12761 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 28260 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 31474 45901867 ~ 45903185 (+)
G47322 NA non-coding upstream 79890 45851095 ~ 45854769 (+)
G47336 NA non-coding upstream 108007 45826312 ~ 45826652 (+)
G47546 NA non-coding downstream 354727 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 477226 46419132 ~ 46470471 (+)
G47669 NA non-coding downstream 988561 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 1027832 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 1033610 46975516 ~ 46976186 (+)
AMCG00013872 NA other upstream 111431 45816372 ~ 45823228 (+)
G47206 NA other upstream 573777 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 838990 45034772 ~ 45095669 (+)
G46945 NA other upstream 2493961 43438492 ~ 43440698 (+)
G46862 NA other upstream 2845016 43087289 ~ 43089643 (+)
AMCG00013879 dennd2d other downstream 1665 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1095189 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1278013 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1810308 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 2297794 48239700 ~ 48258433 (+)

Expression


Co-expression Network