G47501


Basic Information

Item Value
gene id G47501
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46160539 ~ 46163487 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59251
TGCTTGGTTTCTCGACGGGGGTTTATTTGTACACAAGGCAGACTAGTACAGGCGCTGGGGCTTGCCCATGGTGCTCTTGATGTACAGGGCGCGCACGTTCTGCCAGTTCTTCTTCAGCAACGACACCAGGAAGTTGATGGCCAGGTGGATGTTGTACACCAGCTCCTCCTCGGTCATCTTCACGTGTCCGACGGCCACGGCGAGACACAGCACctgggggaggagagggggattACAGCCACTGTCACGCTCCAAGAGGCCCATATTACACACGCGATCCATCAGAGTACAGCAGGTAACACTCGTTTACTCTGGTCTGAAGGAGAGGAGTTTACCTTCTTCATCTGGAACTTGATGGTGGACTTGACCTCGTCCACCTTGGTGTTCAGGTTCTCGTTGTGGGTGAGCAGCGAGGGGAACTTGCCAGCCTTGTTCAGCCCGGGTCCGAGGATACGGGGGATCTGCTTGATCAGGGACTCAGAGGCCAGGAAAGCATCGTATCACCagcttcttgttcttgttcagCTTCTTCAGGGCCTCGATGTCCATGTGGGGCAGTCCTGCCGCCTTGGCCTCGTCACAATGCTGCTGGTCTCCCAGGACGCACACGGAGAACTTGGGTCGGGGGGTGGTCTTCAGCCTGGGGAGCACAGGAGATGCCCTCACGGCTGGCTTCTCGTCTCTGTCATCCACCAGCAACAccattttgttaataaaatggcCGGCGGGGATTGGCCGAAAGCCACCCCCACGCCTCCCCTCATGTTTTAAGACCCAGGGTAGGGGTCCGCCCGCTTTCCCACCCACCCACGGCAGGGGCAGGGGGTCAGTCGGACTACCCAAAGCTTTTCGGCGTCGCCCGCTCCAGTGCCGCCCCGGCCCCAGTGGGGCTGCGTCTAGAGGTCGGGCCAACGCGGCGCAGCTCTGAGGGGCAGCCGGGGAACGGGCGGGCAGAAGGCCGGGTGGAACAGTAAAGGGCCGAACCTGACGGTGCCAGAGAAACGCTTGTCCTTCTGAGGGTCGTAGTTCTTCAGGCTGATCTGCAGCTCCACGGTCTCCACAAACCTTTGGGGGAACAGGAGAGGAATGAGTTAGCGCCAAGTTTAAACCGTGCGCAGACACGGAGCCTAATGTCCGACATCCTACAGAGGaggatttaaatgcatcagaccGTATACAAAAGTGTAAAAGGGTCGCAAATACAAATCCCGAGCTCCTTGGCAGCAGAGGagatgcatgcatgcatgcaggCTGAATGCACAAACCCAAGACCACTCTCCCCCACAATACGTTTCAGTCGTAGCCTCAGTCTCCCCCACTTCATCTCCGTTTCTCtcgctacacacacacaaaaatggctCTTACTTGCGCTGCTTCTGCTGGGACCCCAGCTGGAGTTCACGCACCCCTTCATACAGGGTCTCTCTGGACACCTTGCTGCGAAACAAGAACAAGACAGCCGTCAAGaccacacacaacactgatGTCACTGGTATTTACTGCAGAGctcttttttaacatttaacaattgTAACATGTTGAAATCCAGCAGAAATAGATTCCCAATCCCATGTGACAAGTAGTGCAAGAACTGTGCAATTGGACACAGCCAGGCAGGTTTACACCGGCACCGTCTTCAGGCAAACACAGCTCCTGCAGTAGTTTTGTCTGCTGGTTGTATTTCAAGCTCACTAAATTCCTCGAACAAATCGAAATTAGACCAAAAAAGTGCTTAAATGGTTGGATAATACACTGTACCAAAGTTAATTACACCTGAGGGTGGACACAAGATAAATGAAGGTTAAAATGATCGTCTCATCAGGGTCTGTCCTGGGCGCGGGTGTCAGTGTGGACGGTGTCGATTCAGTGAGACATTGTGGAGTAAAGGTCCAGCAAGAGAGCACTTCACTGACACATTGGGACTCTTCACAGTTAGACTGAACCAGCTGTGAAGCGTGTGGATTATAAAGATACGTTTTAAAATGGCAACAGCAGTGCAGAAGTCATTAAAGGCCAAAGCGGGAGCTGCGGTCAATCTAACACACGTGAAAAGCTTAAGTGcacaaaacatgcttttaaaactGATACGCATTTTATTTTAGGATCATAACTTGTAACACGTTGTTTTCCATCTGCAGTGAAAGCACTTCAGCACCAGGAATAACGCACCGGCTATGGCACCAACATCTACAATAATCACTATCATAATAATTCACAAACCACTTTTACAGCACAATGCGAGTATCTGAGGGATGTTTGTACAGATTGACCGGGTTTATGGGGTCGGATGACAACGGATTAGATCGTGAGAGCGACCTGTGCTTGTCAGGCCATTGCTACACCGGCAGCGCttttaactgtaaaacataattCAGCTGCTCTTCTTGACGGGACAATAATGTTACTGGACAAGATTTATACCCAACAATGCTGTTATGAACATCCTTAAAGCTCCCAAACGCCactaaaacaagtttaaaactCATTTTCTCTCACCTCATCTTGACTTCACGTTTCTCTGAACACGGAGACGGAAAAGAAAGGGCTCAGCGGAACTTCCTGTTTAAGTACGACCAGGCACCGCGCCACCACTGTGGCGGGTTTTGGCGGCCATCTTGGTAGTGGCTAACAT

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU59251 True 2632 TUCP 0.51 3 46160539 46163487

Neighbor

gene id symbol gene type direction distance location
AMCG00013898 tmem9,LOC107679355,LOC107711977,LOC106572715 coding downstream 57923 46094540 ~ 46102616 (-)
AMCG00013891 NA coding downstream 72761 46087083 ~ 46087778 (-)
AMCG00013888 NA coding downstream 86111 46050593 ~ 46074428 (-)
AMCG00013889 mtch1,LOC106572175,LOC106566941 coding downstream 121658 46028415 ~ 46038881 (-)
AMCG00013886 kctd20,LOC106572174 coding downstream 137515 46009104 ~ 46023024 (-)
AMCG00013905 dyrk3,zgc:172180,LOC107728622 coding upstream 221195 46384682 ~ 46386241 (-)
AMCG00013908 NA coding upstream 224667 46388154 ~ 46389618 (-)
AMCG00013907 NA coding upstream 241337 46404824 ~ 46406931 (-)
AMCG00013906 NA coding upstream 288577 46452064 ~ 46465408 (-)
AMCG00013910 srgap2 coding upstream 306884 46470371 ~ 46507717 (-)
G47391 NA non-coding downstream 237625 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 305739 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 332288 45827965 ~ 45828251 (-)
G47358 NA non-coding downstream 333885 45825723 ~ 45826654 (-)
G47259 NA non-coding downstream 537784 45622515 ~ 45622755 (-)
G47538 NA non-coding upstream 67838 46231325 ~ 46238514 (-)
G47661 NA non-coding upstream 640124 46803611 ~ 46838764 (-)
G47718 NA non-coding upstream 894052 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 907856 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 1062314 47225801 ~ 47227254 (-)
AMCG00013890 cacna1s other downstream 76997 46075429 ~ 46083542 (-)
AMCG00013883 NA other downstream 186228 45962190 ~ 45974311 (-)
AMCG00013882 cry4,LOC108413014 other downstream 232230 45919636 ~ 45928309 (-)
G47261 NA other downstream 536644 45623238 ~ 45623895 (-)
AMCG00013846 NA other downstream 816524 45338859 ~ 45344015 (-)
AMCG00013903 NA other upstream 135674 46299161 ~ 46311118 (-)
G47666 NA other upstream 708382 46871869 ~ 46875370 (-)
AMCG00013932 ruxe,snrpe other upstream 1025108 47188595 ~ 47200897 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 1701363 47864850 ~ 47868863 (-)
G47896 NA other upstream 1803938 47967425 ~ 47974915 (-)

Expression


Co-expression Network