G47538


Basic Information

Item Value
gene id G47538
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46231325 ~ 46238514 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59313
agatgaaattcaatgtggacaagtgcaaggtattacatgcaggtaacaaaaatgtccactataattacactatgtgaggaatagaactagatgaagtaacgcatgagaaagacctaggagtctatgtggactcctcaacatccaaacaatgtggggaagcaataaaaaaagacaaacacaatgctggggtatattgtcaaaagtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggaactgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcaaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccgggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaatagactggataggatccttggatcacttagttattaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59313 True 693 lncRNA 0.43 2 46231325 46238514

Neighbor

gene id symbol gene type direction distance location
AMCG00013898 tmem9,LOC107679355,LOC107711977,LOC106572715 coding downstream 128709 46094540 ~ 46102616 (-)
AMCG00013891 NA coding downstream 143547 46087083 ~ 46087778 (-)
AMCG00013888 NA coding downstream 156897 46050593 ~ 46074428 (-)
AMCG00013889 mtch1,LOC106572175,LOC106566941 coding downstream 192444 46028415 ~ 46038881 (-)
AMCG00013886 kctd20,LOC106572174 coding downstream 208301 46009104 ~ 46023024 (-)
AMCG00013905 dyrk3,zgc:172180,LOC107728622 coding upstream 146168 46384682 ~ 46386241 (-)
AMCG00013908 NA coding upstream 149640 46388154 ~ 46389618 (-)
AMCG00013907 NA coding upstream 166310 46404824 ~ 46406931 (-)
AMCG00013906 NA coding upstream 213550 46452064 ~ 46465408 (-)
AMCG00013910 srgap2 coding upstream 231857 46470371 ~ 46507717 (-)
G47391 NA non-coding downstream 308411 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 376525 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 403074 45827965 ~ 45828251 (-)
G47358 NA non-coding downstream 404671 45825723 ~ 45826654 (-)
G47259 NA non-coding downstream 608570 45622515 ~ 45622755 (-)
G47661 NA non-coding upstream 565097 46803611 ~ 46838764 (-)
G47718 NA non-coding upstream 819025 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 832829 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 987287 47225801 ~ 47227254 (-)
G47807 NA non-coding upstream 1256897 47495411 ~ 47495684 (-)
G47501 NA other downstream 67838 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 147783 46075429 ~ 46083542 (-)
AMCG00013883 NA other downstream 257014 45962190 ~ 45974311 (-)
AMCG00013882 cry4,LOC108413014 other downstream 303016 45919636 ~ 45928309 (-)
G47261 NA other downstream 607430 45623238 ~ 45623895 (-)
AMCG00013903 NA other upstream 60647 46299161 ~ 46311118 (-)
G47666 NA other upstream 633355 46871869 ~ 46875370 (-)
AMCG00013932 ruxe,snrpe other upstream 950081 47188595 ~ 47200897 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 1626336 47864850 ~ 47868863 (-)
G47896 NA other upstream 1728911 47967425 ~ 47974915 (-)

Expression


Co-expression Network