G47580


Basic Information

Item Value
gene id G47580
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46419132 ~ 46470471 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59362
CTCAGCTGTGAGGCCAACAGTGCAGTCGACAGGAAGTGCATAAAACATAGTGCAGACAGAGTGTCACCTCTCACACTTTCTGTGCAATGGCTGAGAATGAgtgtggggggctggggggcgtGGTTATCTcggtttaaataaaaaatagacagCAAAAGTCAAAAGCGTTGCACCAGGAGAAACTAATTTGTAATGTGGAGGTTATTTATAAACCTGAAAAAAAGTGCTTTCCCTACATTGTACCGGGTATGAAACTTTCACAAACATTGCCACGGCAATACTgaactgttttttgtgtgtgtgtgcgtctgtgtgtgagagagagagagagagagagAGAGAGAGCGGGGGTTCCTGCAGACTCATCGCTTTCaatggtgtgtttgttttgtttgagtctGTTTGCAAATCCCCTGAGCGGTCTAGATCACGGCTACCTGTCCGCCAGTTAGCCGCTTTGCATGGATTAATCGGGTCGGTGCCGGAGGATAAAAGCCCAACGCCTCCTCCACCCACGTCTAAGAGCAGTGAGCACTCCTGGGACGCACGAGGGCAAAGGGGCTTCTATAACCGTGCTCAGCTCTATCCCTGACTCGGCTGAACCAGCTCAATGGAGACACACGGATACTCTGTGTCCAGGTCATGAGAAGCTGATGAAATACAGCAGCCCCCTGGCCTCGCCCCCAAATTCATAGGAACCCCCGGCACTGTTGAACATCGTGGCAACAGAAGGCAAATGACGGTTTTAATACATGACCTGTGGTGACCCACAGCAGAAAACCTGTACAGAACATAAACATAATGCAATAAAaactcaaatgtaattaatagcCAAGTACAAATAATCCATCCATATTTGTAATGCttaagcttaaaaaaataaaatgcagacatGGAATGATTTATTTTCGTTCCCCCAGTTAATCTCCTAAAGCTTCCTGGTAACACGGAGAGGAACCCCAAGTGGCGTGTGCGTTTGTGGCTGTGTTTCTTGCCGGATGCCAATAAGCCCTGAGGACGCCGAAGCTGGTTTGTCGGCCTGGAGTCGACCCGTTGCTGCAGACGGACACCTCCGGCTCCGAGACGCTCCCCCGAGGGACTCCGACATAGGAAATGCAAAGCAACACGGCTAACGCTGGCACTACTGAGAGTAAAGCACACAGCCACAGCTGTACAGATGTTTTTCCAAAAGCAAATCGCACGCTATGGTATCATCGACCCAGATGATTTGGGGAAACGCCACATGCTGatagaaattattttcttacatatttttttcttccccccaacagttctgcaaaataataataataaacagagctACAGATACAGTGACTTCCTTTTCCCATAGCAGATCTAGAGAAACCTCAATGCTGTCCAATGGGCTGCTCCAATAAAGGGCAAAGGTCAGAGATTAAACCTGTTTCACCTTCACCTCCATTTTCAAAGCAGATTTAGTtcctgaaaaaatgaaaattgaatcCATCATCAGAACGACTGCGGTGACAATCTGCTCAGAGCgatgaatttaatctgccacgCTGTCGTGTAACAATGACGGTAAATGGGCGATTATATAACACGCACATGTACTGTATAGCATCATGGAATCATTCATGAACTCATCTAACATCACAACAGGGCATTGACACTTACAATCCAAACGCACTGGAGAATAATTAcagcatataaaaatatatattttcctgtgcTCCGATTTCACTCGACGCACATTTTTCTGATCTGTTTTCCATGATTTGAAGAGACGTTGTGTCCCGTTATTCCAGTTAACATGATTGCACGTACAGGATAGatatttttattgtggttttgCTTGTTTCTGACAGACACTGACATGACCGTACAAAAGGAGCATTGTTTAGGAGCTGCTACTGCTATCCTGGAAGATCTAAtggcttttatttatgttatttattgtagtttGCGCCATGCTGCTGCCGTCCTCTGGACACCCTGCCTTTGTTCTCCACACAGCAGACTCGTCTTCACAGAGTTGACAGTTGGCTCGATTTGCATAACTAGCAAAATTTGACTTCAGCTACAGAGATCCCATTAAACCCAGAATAGAAACAGTGTCCGCCTGTCAACGCCACCACGGCCGTCTGTTTTTATTCTGCTCCCGGCCAGTcaagtctttctttctttctttccgtTCCCCCCTTCCCACACAAAGGCAGAGACCACTGTGTCTCAGAGTCTGTTTGTACATTATTACTGATATTCGCTGTCTAAGCTACACAGAGAAGGAAGATCACAGGAGCTACACGTGTCACTGCTGTGCTGGTATTGCTGAAGCGCAGGGCTTGTGTTCATGTGCTTCGGGGGACGCGTTCACCATTTGGCACTGGGTCACAACCAACCCACCCTCGGCCCAATAAATTCCCCGTGAATGAGATCAGAAAGAACAAAGAGAAGCCTTCTCCACTCCCCTCGGTGAGATCACAACCTGAAAACGTCTGACGGGGCCGGAtttaaagaagagaaaaatgtaaacggggaaaacaaaccaaccccCCCGCTCCCCGGacagataaacaaacacaaaagtcaGTGTCTTGTCGTCCCTCTCTGTCCAGAAACTGTCCACTTTCACAGAAGAGAAAGACCCTTTTGGTCTCGTCTCGAGGAACGGATCCATTTGGAACGTCCAAGATGCGTTTCTCTGTCGGCACAGAGGGATCCGGTCTCTCCCGACGGGAGCGGCGTGTGAAGCCTCTCGTGCGTCAGTCTGGCCCACTTCCACAGCTGTTCggagcagtcagtcagtcaacagCCAATATGGCCGCTGTTTACAGAAACaacatccaaaacaaacaaagccaatCTGTGGGAAATCAAAAGTCTTTCCTGAAATGTCCTGGTCCGGTTTCTCCAGAGGGCGACGAGGGGAAAGGTTTAAGTTGTATCCAAACGGAGGTTCGTTTAAACATCTATACATCAAACAAAGATTAAAGACCAAATCAAGATGAACAAGGGGCCAGTTCCCACGATGCACTGCTCTGCCTGGCACCATCCCTCCCAAAATGAAAAGCGCACGGAAATTCCCCCCCATTACTACTCAAAGAAATTAAATCCCTGACGGCCGCTCTCCAGGCCTCCAGAGCCTCTCTGTGAGCATCCTCTCGGCCCCCCCCGCAGTGGGAAGCGGGGCAGGGTGGAGTGGGGGGCGGTCTCACACGGGGCAGGACTTGTCAGAGGGCGGCGGTGGCGGCGGGGGCGTGGGCGGCgtggtggaggtgggggagCCCATGGGTGGGCCAGCCGAGGCGGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59362 True 3294 lncRNA 0.48 2 46419132 46470471

Neighbor

gene id symbol gene type direction distance location
AMCG00013904 NA coding upstream 14447 46393809 ~ 46404685 (+)
AMCG00013902 NA coding upstream 148313 46259978 ~ 46270819 (+)
AMCG00013901 NA coding upstream 201921 46215736 ~ 46217211 (+)
AMCG00013900 NA coding upstream 211349 46199714 ~ 46207783 (+)
AMCG00013899 NA coding upstream 221235 46179141 ~ 46197897 (+)
AMCG00013909 fam72a,zgc:101564,LOC107656018,LOC108425783,LOC107548849,LOC107675824,LOC107590148,LOC105017400 coding downstream 82560 46553031 ~ 46557951 (+)
AMCG00013913 NA coding downstream 273510 46743981 ~ 46752657 (+)
AMCG00013911 foxp4,LOC107675840,LOC107739274,LOC107548756 coding downstream 325571 46796042 ~ 46837010 (+)
AMCG00013912 LOC106565692 coding downstream 388169 46858640 ~ 46870713 (+)
AMCG00013918 NA coding downstream 539821 47010292 ~ 47012262 (+)
G47546 NA non-coding upstream 116263 46296633 ~ 46302869 (+)
G47390 NA non-coding upstream 497234 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 512733 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 515947 45901867 ~ 45903185 (+)
G47322 NA non-coding upstream 564363 45851095 ~ 45854769 (+)
G47669 NA non-coding downstream 459996 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 499267 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 505045 46975516 ~ 46976186 (+)
G47728 NA non-coding downstream 676884 47147355 ~ 47156704 (+)
G47762 NA non-coding downstream 761583 47232054 ~ 47248989 (+)
AMCG00013879 dennd2d other upstream 459938 45943571 ~ 45959194 (+)
G47398 NA other upstream 477226 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 595904 45816372 ~ 45823228 (+)
G47206 NA other upstream 1058250 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 1323463 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 566624 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 749448 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1281743 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 1769229 48239700 ~ 48258433 (+)
G48018 NA other downstream 1798283 48268754 ~ 48269272 (+)

Expression


Co-expression Network