G47669


Basic Information

Item Value
gene id G47669
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46930467 ~ 46934777 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59479
GTGTGTTTAGGGAATAAACTGATGTTTTCCGTGGCTGTTGAATTCACGACACAGGAAAAGTCTGAGGCAAGAAAGGTGAATCGAGGTCcaagaaaatgttgtttgtgGAAATATGGCACCATTTATTGAAAGTTACAGCTGAATTTTTCTgccagaaagaaaatatatttcatataaattaaaaaataaataccagacactacataaatacaaaatgtttttttttttgttttttttttacaagacaATTCATTTTCCAAGCATTTTATCTGCTGTGTTCGAACTGATTCATGTTTGGTTTGTAAAGTCAGCGTTACACTAAGAATTTGGTGTATTTAGTCCactgtctttttcattttagtcaAATACCCAAATTTGCTTTCATTTCGACTCTCTTGCGCACAAGATCTTTTTTTCGCCCCATCAATTAGGAATGTCCAAAAAGTCATTTTCATCCACTGCAAACCTACATCGGCCAATCACAATCCTTGCTTTTGCCAGGTGTGCTTTAACATGATTTTATCTCATTCTGCACTTTGTCTATGCACGTGTTGCCCTGAGAGCCAGCTGACCGTCCTGCAGCACCCGTGTGGGGGTTTGTCTATCCAATGGATTGTTGTTCCCTAAATCACTACTGCAGAGAGGCTGTCATCAGCTGGCAGCTGCTAAGGATTCTGGGCTTAGAATCACGCATTATTATTGACATGGCAACACTTTAAAACAGTGGGCCGTCCAGTATGAATTTAGGCTGTTAGTGACTGTGATGTGTGATCGGATATTGCAGGAGTGACTCGCTCAgagttgtgtgtatgtgtcggCCGTGTGAGGCGGTTGTGATCAGTTTTGTGTCGTTCTTTCACAGTTTGAATTGAGGGGTCTGGGTACCGCAGTGAACACAGCAGATACGAGAAATCAATCAGTAGACAGtggatttaaaatacattttctttcgcCACAGGCAATAGAGCGTTTAATGTCAGCTGTCCTATAGAGCTGAGGAGGGCAGGTGTAAAGAAGGCAGACATGACATGAACCAGGGCTAGTAAGAGCTGTCACATTGGgctcaaaaaacaacaaacacaggattaaaatacagcacaacTCGCACAGGAACACACCAAGGCCGCGAGCTGAAGAAAGGCAGGGGaattcatatatacattgatacagaacaaaataaagtcaCTTTccataattgcttaattgatatTGCCCCCCTGTGGATCAGCAGTGTCACTACAACTTGCATAGAGCCTGGCTGGCCGCTTCCCCTCACTGCTGCTCCAGGCAAGTACCTGAGATATCCTTTCATGGATTCGTTTTTCAGTTTTactctgcatttattttgtattaattcccATTATAAACTAACAAACGTGATTCAGAGGGAAATGCAAATAAGTGTGTCCTCGAAAGAGTGAACAATTGGGTCAGTTGGCATAAACACGGCAAGATGGAGGGAAAGACAAAGCAATGCCATATTTTAATTGGCAGGTTTTGAGTATGTTCTCCTAGTATGAGGTTCTGACGGTATGAGCCGGGATCACGAGGTCGCAGTGCTGGTAATCCAGACCAACGATCAAAGACTCAGCTTTATTTCTCATCGGCAATTAAGGTTTTCACCGCGAAAAACAGTCCACTACCTGGAGAACCTGCCGAGCGAAGGACCCAACTGCATCCGGAGGCAAAGACAACCTCTGAGCTTTCAAAACGCAGGGTGTACAAAATAAACGTACAAAAGCAATCTGTATCACCGGACTGAGATTAATTGCAGATTAAACAACCGATACAGTCCAGGTGGGACACGGGCTGAGCGCTCGACATCAAGCCTGTCATTCCTGGGATTATTCTGTCCAAAAGAACTACAACAACAACGCAGAGACAACCCGAAGACAGAACGGTTGTGTACAGCAGGATCAAAGTCAGACTGCTTCTCAACACCCGGTCGAGGATTTGATGTGAACGGAATCATACGTGGATGAAGGCATTGCTGTAACACTGGGGTAAAAAGGAAGCTGTCCAATTGAAAgctgaataaaaacaagaaaacatgtcAGCGCGGGTGGGGGGGGATCTGACAAGGATAGGCAAGATTGTGTAGTAATAGACAAAAGTCCACTCTGCTGCTGAAGGTGATTTTTAACTGGCTGACGGGCTTTTTGTGAATTTATTTCTTCAACAGAGTGATTTAATGCTGCTATAGTTTCTACCAGCATGGGGCAAATCTGTCAGTGGAggaatatgtttgtgtttttattttattgcgcTATAACTAGCCCTGACTCCGTTGCTGTACCGGTAcgaggtgcattgtgggaactgaaacaaaacctgCAAAACTATCAACGTTGGctaacaaaaaaatcacattcacaAAGCTCATTTATAGCAGAATATAATCGAAGAATTACCATTCATCTGGGATTTCTTTTTGGATTTAAAAGAcctatatgtttaaaaaaacaaaaacaaaacaatcactgtaaaaattacaaatacatgaCTCTGTTTCTGGGACGAGGTCATCAGTCCTGAGTGAACAGGATTGGGTTATTGGTTAAATatttccaaatacaaaaaaaggtcacttgaggaataaaataaaaaacaaaaataaaaacgcaaGTCAAATATAATCCGGAGGTTCAACAGTGTACACAAGCCcgcaggttttttttgtttttttttaaacttttttcttttctttttttttttttcttttaaattttttaacacaaaattacatttccagtgctttgggagaaaaaaacaaaaacataaatgctaTTCAAAACagtccaaatatgtatttctagGCATATAAGTTAAAAAACTGGCCACTATGTTAAATTGGCATAGCTTCGCATCCTGCTGATGCTAAAATCATTCAGCACAAGTATCTCAGCACCCAGACCAACCTGATAAAAATCTGACGTCACTGAAGGCCCTGTTTCAGACCAGTCCTACCGAGATCAATCCCTTTTGAGAGGTGTTGTGCCTCCTGGTAATTTTCGGGGGTTTAGTCCTCAGGGCCTTATAAAGATCACACCTTTTTAAGTGTGGCATTTAACCAcagtaataaattaattgtattgacCGTGGATCAATACATGTGGAGTTAGATGGGTGTTTGAAGACCCCTTTTCTCTGGAATGAAGTCCTGAGAATTACCCACCTAATACGTGAGCTCGAGTATTGGGGCAATACTGTCGGTCTGAGAGAGACTCTCTAGCTACCTCGTGAACAGGGGCCTTCGAGCGGCCATCACTTCAGTGGGACGACTCGGGACGACTTCCCTGCTCTTATCggatcacaaacacaaaaagctgccagttgtaaaaaaaaaattaaaactaaaaacgtaaatgtatatttccctCAATTCAGTTTTGAAGCCTTACATTCATTCGCGCCCGACTGCCTGACTGGGAGGCGGTCACGGGGGCGCACAGGAAGGAGCGACTTCTGTGGGAACAGTAAAATCAATCGCTGTTTTCGAGGCGCGATAACAACGGATGAGGCGTTAAAGAAAGTGGGTCTGCTACTGCGGAGGTTGGCGGGCAGTGACGCTGTGTCTGTActgctttggctgtgtgtgtacgagtgtgtgcgtgtgtgtgtgtgtgtgtgtgcatgtgcggtTTCCCTACAGAGGACACTCAAAAGCACACACGGGCacgtaaaaagtaaaaacaaaaacaaacgagTGCAGTCAGTGCTACGGCGGAGAGGGGGTTGGCGGTTCGCAGGGGTGTGCGTGGGGCACGGCGTGGGGGAGTGTCACAGGATGTCGTCCTCCATGCTGAAGCTGCTGCGGCGGCTGCTGTCCACGGACTCCTCGGGGGACATGGCGGACAGCAGCGGGTCGCCCCCCAGCGGGGACAGCGCCTCATCCATGAGCATGAAGCCCAGATCCTTCTTGTTGCCCTCCGGGGAGGTGAAGGACAGGTCGGTGAGCTGGGACAGGGTGTCCGGGTAGCCCACTGCGCTGTCGCACAAGTCCAGTGTCTGCGCAAAGTCAAAGTGCTGGGAGCTGCCCACTGATGGGTACTGCAGCGGCCCTGGCTGGTGGTTCTCCATCGGGTGTTGCTGAGGCGtgtgctgctggtgctgctggggTGGGTGCTGTTGGTGCTGGGGAGGGGGCAGGCCGTCCACGCAGGGCTTCTCCTCGGGGCTGGTCTCCTGCTTCACCAGGGAGTTGAGCAGCTCCGCATGGCCCATCCCGGAGGGGGAGTTGCTGGGAAGGCCGTGCATCCGGGCTTGCATCTCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59479 True 4275 lncRNA 0.45 2 46930467 46934777

Neighbor

gene id symbol gene type direction distance location
AMCG00013912 LOC106565692 coding upstream 59754 46858640 ~ 46870713 (+)
AMCG00013911 foxp4,LOC107675840,LOC107739274,LOC107548756 coding upstream 93457 46796042 ~ 46837010 (+)
AMCG00013913 NA coding upstream 177810 46743981 ~ 46752657 (+)
AMCG00013909 fam72a,zgc:101564,LOC107656018,LOC108425783,LOC107548849,LOC107675824,LOC107590148,LOC105017400 coding upstream 372516 46553031 ~ 46557951 (+)
AMCG00013904 NA coding upstream 525782 46393809 ~ 46404685 (+)
AMCG00013918 NA coding downstream 75515 47010292 ~ 47012262 (+)
AMCG00013923 NA coding downstream 91708 47026485 ~ 47026974 (+)
AMCG00013917 NA coding downstream 143083 47077860 ~ 47085038 (+)
AMCG00013924 etnk2,LOC106565623,LOC107694884 coding downstream 188931 47123708 ~ 47132176 (+)
AMCG00013939 lrrn2,LOC108425772 coding downstream 606456 47541233 ~ 47543434 (+)
G47580 NA non-coding upstream 459996 46419132 ~ 46470471 (+)
G47546 NA non-coding upstream 627598 46296633 ~ 46302869 (+)
G47390 NA non-coding upstream 1008569 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 1024068 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 1027282 45901867 ~ 45903185 (+)
G47681 NA non-coding downstream 34961 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 40739 46975516 ~ 46976186 (+)
G47728 NA non-coding downstream 212578 47147355 ~ 47156704 (+)
G47762 NA non-coding downstream 297277 47232054 ~ 47248989 (+)
G47767 NA non-coding downstream 321720 47256497 ~ 47258758 (+)
AMCG00013879 dennd2d other upstream 971273 45943571 ~ 45959194 (+)
G47398 NA other upstream 988561 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 1107239 45816372 ~ 45823228 (+)
G47206 NA other upstream 1569585 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 1834798 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 102318 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 285142 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 817437 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 1304923 48239700 ~ 48258433 (+)
G48018 NA other downstream 1333977 48268754 ~ 48269272 (+)

Expression


Co-expression Network