G47684


Basic Information

Item Value
gene id G47684
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46975516 ~ 46976186 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59494
CTGAAGAATTATGACTTAGGATGTGCCAAATTCTTGCCATCTGTCTCTCAAACACCCCTCCCTTAGAATGGCACACCATGTTCCCTTCTCTCATTATTGCGTCGGCTTGCCGGGCAGCACCACTCCATGCCTGGGGATGATTTCACTGTGCCGTACTAGTGTGTTCTGTACCGTAACCAACGAATTCCACAGCAGCCGTTAACGAGAGGGAATCAACACGTTGTTGCTCAGAGAGAAGAATGGATAAGGaaagacagaaaggaaaaaGCTGAGCGAGAGAGGACTACCTGCGCGAACTTGGAGACCGATCTTCACTTTGACCTCAATGATTTCTACGTCGGGGTACTGTTCCCAGAACCCACACCAATACTCCCCCGCGTCTCCCTCCTCGAGGGGTTGGATGCTGACCCAGGCTTCGACTGTGCTTCGGTGCTGTGTGACCTTCATGGACACCCGTCCATATCGCAGGTTGGTGGCCGTCCTCAGCACGGTCACACACTGCTCTTCTCCGTTCTTCTTGCACCAAATGATGACCGGCCTCCTCTGCCCTGTCGGTTTGCATTTGCACAAGATCTGGCAGTTTGTGCCGGCAGTGCCTCTCACCACCGTGTAGCCACTCTCTGCCAATCCTGGGTTGAAGTTCTCCAGTTCCAGCATCTGTATTGGAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59494 True 671 lncRNA 0.53 1 46975516 46976186

Neighbor

gene id symbol gene type direction distance location
AMCG00013912 LOC106565692 coding upstream 104803 46858640 ~ 46870713 (+)
AMCG00013911 foxp4,LOC107675840,LOC107739274,LOC107548756 coding upstream 138506 46796042 ~ 46837010 (+)
AMCG00013913 NA coding upstream 222859 46743981 ~ 46752657 (+)
AMCG00013909 fam72a,zgc:101564,LOC107656018,LOC108425783,LOC107548849,LOC107675824,LOC107590148,LOC105017400 coding upstream 417565 46553031 ~ 46557951 (+)
AMCG00013904 NA coding upstream 570831 46393809 ~ 46404685 (+)
AMCG00013918 NA coding downstream 34106 47010292 ~ 47012262 (+)
AMCG00013923 NA coding downstream 50299 47026485 ~ 47026974 (+)
AMCG00013917 NA coding downstream 101674 47077860 ~ 47085038 (+)
AMCG00013924 etnk2,LOC106565623,LOC107694884 coding downstream 147522 47123708 ~ 47132176 (+)
AMCG00013939 lrrn2,LOC108425772 coding downstream 565047 47541233 ~ 47543434 (+)
G47681 NA non-coding upstream 3978 46969738 ~ 46971538 (+)
G47669 NA non-coding upstream 40739 46930467 ~ 46934777 (+)
G47580 NA non-coding upstream 505045 46419132 ~ 46470471 (+)
G47546 NA non-coding upstream 672647 46296633 ~ 46302869 (+)
G47390 NA non-coding upstream 1053618 45921140 ~ 45921898 (+)
G47728 NA non-coding downstream 171169 47147355 ~ 47156704 (+)
G47762 NA non-coding downstream 255868 47232054 ~ 47248989 (+)
G47767 NA non-coding downstream 280311 47256497 ~ 47258758 (+)
G47791 NA non-coding downstream 430430 47406616 ~ 47407552 (+)
G47797 NA non-coding downstream 444830 47421016 ~ 47421229 (+)
AMCG00013879 dennd2d other upstream 1016322 45943571 ~ 45959194 (+)
G47398 NA other upstream 1033610 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 1152288 45816372 ~ 45823228 (+)
G47206 NA other upstream 1614634 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 1879847 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 60909 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 243733 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 776028 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 1263514 48239700 ~ 48258433 (+)
G48018 NA other downstream 1292568 48268754 ~ 48269272 (+)

Expression


Co-expression Network