G47791


Basic Information

Item Value
gene id G47791
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47406616 ~ 47407552 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59645
atttaatttctttatacaaatgaaaaaagagaaCTGCAATAAGAACAGTAAATGTTTCACAGCtttaagcaaaaaacaaacgtaaaacaagtacaaaaaataGTTAAATCAGCGAAGTATTACGGTCAGTTTGGTCTTAgtcatatataataaaaaggaaatgtatgtcACTAAATACTAAAgcaacattatttataaaatcattGTAAAACTTTCCACAGAAATATGTATGtaacaaaatgcatattatgCACTATAAACGCAGAGAGCTTTTCAGAAGTTCTTCCCTATCGCTTAACATAAACCAGACAAacaccacaaaacacacaatgtttcaATTCTGTGCTGATGGCTGTTGCATGACTTGAAAAATACGTATGCCTGGCGTGTTTCCAGTTGATGCCGGATTGCAGAAGCCTGGAGGGGGGTTCACACAGTGCAAACCCCCCCACGGGTCAGAGATGATTTCCAACTTCCAGCAGCAGCGTCAGAAAGCCTGGCTGAGAGGCGGAAAGAGCTGGAGGTCTGAAAGCCACTGTCTCACTTATTGAGCCGGAGCAGGCCGACCCTGCAGCTCCACTCGAGACACCGGCGCCGCAGAGCTGCTGCATCCGAGGGGCACGTGCAAACAGATGCACTTAATACGGGTGTGAGAGTCTCAGGGCTTCCACAGATATCCATACACTTGCACATGCCTATATTGATCGCATTGCCAACAATGGGGTGGACCTCTGAAGCATGACAGCCTTCGATACGAGGACTCATTGTGCACATTCATTCGTTCCCTTCCAACGGCAAGGTTTTTCTCCGCTATAATTCGGTCTTTGTATCGAGACTGTGATTCTGAGAATATCCAGTGTGATGAAATGAATCCAGTAATGGTATGAAATAGGATCAGCGAATATGATATGCTAATGTATTCTGATTCAGCCCAGGT

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
TU59645 True 937 lncRNA 0.43 1 47406616 47407552

Neighbor

gene id symbol gene type direction distance location
AMCG00013924 etnk2,LOC106565623,LOC107694884 coding upstream 274440 47123708 ~ 47132176 (+)
AMCG00013917 NA coding upstream 321578 47077860 ~ 47085038 (+)
AMCG00013923 NA coding upstream 379642 47026485 ~ 47026974 (+)
AMCG00013918 NA coding upstream 394354 47010292 ~ 47012262 (+)
AMCG00013912 LOC106565692 coding upstream 535903 46858640 ~ 46870713 (+)
AMCG00013939 lrrn2,LOC108425772 coding downstream 133681 47541233 ~ 47543434 (+)
AMCG00013941 LOC106566646,LOC106571888 coding downstream 316882 47724434 ~ 47730274 (+)
AMCG00013953 NA coding downstream 678407 48085959 ~ 48097083 (+)
AMCG00013952 LOC108250382 coding downstream 692124 48099676 ~ 48143917 (+)
AMCG00013951 NA coding downstream 737846 48145398 ~ 48158245 (+)
G47767 NA non-coding upstream 147858 47256497 ~ 47258758 (+)
G47762 NA non-coding upstream 157627 47232054 ~ 47248989 (+)
G47728 NA non-coding upstream 249912 47147355 ~ 47156704 (+)
G47684 NA non-coding upstream 430430 46975516 ~ 46976186 (+)
G47681 NA non-coding upstream 435078 46969738 ~ 46971538 (+)
G47797 NA non-coding downstream 13464 47421016 ~ 47421229 (+)
G47804 NA non-coding downstream 137640 47545192 ~ 47545591 (+)
G47810 NA non-coding downstream 144607 47552159 ~ 47583902 (+)
G47936 NA non-coding downstream 651181 48058733 ~ 48059592 (+)
G47937 NA non-coding downstream 652363 48059915 ~ 48060814 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 178647 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 332908 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 1447422 45943571 ~ 45959194 (+)
G47398 NA other upstream 1464710 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 1583388 45816372 ~ 45823228 (+)
AMCG00013943 NA other downstream 344662 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 832148 48239700 ~ 48258433 (+)
G48018 NA other downstream 861202 48268754 ~ 48269272 (+)
G48026 NA other downstream 873511 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 1126334 48533886 ~ 48546200 (+)

Expression


Co-expression Network