G47809 (lrrn2,LOC108425772)


Basic Information

Item Value
gene id G47809
gene name lrrn2,LOC108425772
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47540563 ~ 47545591 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59664
TTTCAgtccaaaatgttttaataatagcTCAAAATAGAATTTAACACACAATCGTCATCTAAATCATCATCGAAATAAGAGCAGAACACGGAGTAGGAAATCCAGAATGTTATGTACAGTTGTAGGTAAAAAACCTGggtagggagagagaaagagaggtctATTGAAATTAGGAGACACACTGaccatttaatttacaaaactcGAAAGAAAGCAGGGACACCTCGTCAACTCAACCTTCTTACAAAACAGGAACCACTTCGCTGAGAAATTAGTGGTCAAGCAGATCCCGATAACCTCATCTGATTGGGTGATGCACCCTGCCTATCTCACCCATTGGCTGATTAAACCGTGTTCAGTCCTGTTTGGTTGATGTGACCCTCCCAGGCagcatttttgattgtttttttattacccCCACCCTCTCCAACACCCACTGACCCTCAGTCCCTTCAGTTGCCCCTCCCCAGTCCCACCCATCTCCCCACATTTTCTCCGTTTGGTGTTAAACAAATCAGAACGGTCACTGTCCATGAGAGGTACACAGGAAAGCAACAGACTTCAAGAGCATACAGTGAATGACAGCATGTAAGCGAAGGAATCTCAGGAAAAAAAGCACTATTTctttcccccccaccaccccattTTATTCCTCAGAGCATGACATCATCTTTGTACATGCCATCGGGGCGCTCCGGTGAGGGTTACGGTAGGGTTTGATGTGTGGTAAGTGGAAGTGCTTGTAACATTTTTCTAGCACTTTAATCCGCAAGTGCTCGGAGCCCAGCCCAGGCTGCGGCACGTCTCCATagctgaacattttaaatgatattttaaGTGCTTGCTGGGCTCCGCGTTGCCAGAGCGAGAGTTTGGGAAGCTGAGAGAAATCACCGTGGGACACACCTGCCTCACCACACTGTCGAGGTGCACGTCTCTGTGTGCAGCTCCAGGGCTTTGTACAGTGCTGAATACATTTTGGCACTTCCATTGTGTAATTTTGATGGTTTTCCccatttgttattttccttgttGTTTTCTAATTGTTCTGTgaaggcatgttttttttacccCCCAAAGTCCACTTATTATCatagctgtttatttaaagaatgaaatCTGCCAGACAGTGTAGCAgtgtttttgcagttttctttccgtttttaaaaacattgcgCGATGTCGAGTTCCTGCCATGCACCCCACCACTTCGCTGAGGAGGCCTTCCAGAGAGGCAGGCAGTGGCGAGGGACACGCTGGCGGCCAGCCGTGGTCCTGGTCTCCTCTTCGTCTCCTCTAATACCACTTCCTTGCCAACAGATTCAAGGCTTTGTACTCGGTCCATTTCTTTCTGCCTTGAATTAATCGAGCCTGTCTTCGCTAGCCAAAcgtacaatatttatatatttatattgaaaatgaaaaggcagtTTAACTTTGATGTATGTACAGTGGAACCCaattgatttgttatttctagCTCACTTGTCTTTTGTTCGTTTCTCTTTGCTGCTATTGTGAAATAAGTACAATTATCTAGATCAAATctaggtaaaaataaaatcgcCTATTGGAAATTGTATTGTAGTTTACGTCAAATGATATTAGTCCCTTCTTGCTaatgagcaaaataaaatacacatataggcAACTGTATTCTTTTGGCATAGTTTTCTGCAACACCTCTGGCCGCAGCGCAACAGTACAATCTTGCAGTGCTAGATGTTTCGAGAGAAGATTGATTGTATTCTAGTCAAAAATGACAAATCTAAGTAAAGTACAAATTCGAGTTGGTAAACTTAATCTAAAATACTTTTGGGTACCACTGGACGTACAgagtgtttatgtatatatctcATTACACAAACACGTActgtttgttaaatatattcatatatatatatatatatatatatatataaaataaatacaaatcgaGTCTCTTTACAACACTGTACTGGGTAGCAGAACACTGTCCTTGTCTCTGTTGTCGATCAATGCACATCCATCTGGTATCACGTCTCGTTTCTTATTTTAGATTGTCTGCTTGAGATGATTATTAATGCTGGAAAGACAGTCATATGTTCCAGAGATTTTCGTATTTGTGGTTGTTGACGATGAGGATGGTTTTGttcaaatgtacttttctttttttttttaatgggaatgCTCGACACTGCACAATTCTGCCTTGGGGCCCTGAACAATGTGGACCTTCAGAGCATCCTGAGCCAAGCCCACAGCGCTCCCTtcctctctgctgctgctgccgtcGCTGTCTGTGCAGCTCTTACTGGAGCACTGCTGCTGGGCAGCTGAGAGGACCATGTAGCACTCCCTTTCAGGGGGCAAAAGAGATGTCTCTGGTTTCTCAGTCCCCTCATCCTCCCCTCGCCAGCTGACCGAGGCACCACCTTGACAGGCTTTGGCTGCCAACAGGAGAAGCAGAGCAGAGGCTGCCAGGATAGCAGCCGGGGTCAGATCAGGAGTTGTCGCCGGGGCTGAAACCTCTTTAGTCCTAAAATGGAGACAGGAGGTGTCGTTTGGGCCCAGGTGCAGACACACCCTGTACAGGGTACCGGGCTGGAGCCGGGTCAGGTTGAACCCTCTGGTTCCTGCCAGGATCCGCGTGCTGTGAGGGTGATAGTCCTCCAGGCTCCCGTTGGCTAACCAGGACAGTTTGGCCGAAGGTACATTTCTGCTAGTAGACCAAGACAACAAGGCATAGCGTTCCTTCACCTCCTTCACCTCCAGGTGATCACTGCTTCTTCTGGTGCTGATCATTACGGCCTTGCCCATCCCATCCACCCTGACGGTCACACTGCGAGTGTCGGCTCCAACTAGGTTCTGTGCCACACAGGTGTAAAACCCTGCTTCTTCCGAGGTTATCCCAAAGATCTCCAAGGTGCCCTCAGGTAGTACCTGGTACCTCCCAGAACTCGTGGAAGGTGAGAGCTTCTGACCAGAAGGTGTGACCCAATAGATGCTAGGTTCTGGTTCCGCTAAGGCCCGACAGTGTAGTGCCAAGTTGTCCCCATGTCTGACATGAATGTGAGAAGGAAATGTCCCAGGAGCAATCAAGGGTAAGCAGCTGTCTGCCATCTCCCTGAAGGACACTTCTTTCACCCTCCTTGCCTTGAGCTCTGGTGGCTCGGAGCAGAAGGTAGATTGGGGCTCAATGAACCGAACAGGTCTGTCATCTTCGGCCCCCACCCATCGGATAAGACAGTCGCAACGGATAGGATTGCTGTGCAAGCTGATCTCCTGAAGGCCAGGTAAGGAGCGGACTGTCTCCCGGTGCAGGGCACTCAAAGCATTGCTGTTGAGCATCAGACTTTCCATCCTCGAGAGGCGCTGGAAGGCCTGGGGGTGGATGTAGGAGAGCCGGGGGTTGTTGGTGATCTCAAGCTTGGTCAACTCTGGCAGGTTCTCCAAAGCAGAATGCTCTATAGAGACCAGGTGATCCATGTTGTTCAGTCCTAACTCCTTCAGGTGAAGCATGTCTCTGAAGTCTCCTGGCTGGACAAGTTCAATGGGGTTCTTGTTCAGGTCCAGAAACTTCAGGCCTGGCACCTTTTGAAGGGCTTCCTTTGGTACTTTAGTTAAGTGGTTATCGTAGAAGGAGATGCTCTCCAGACTACACAATCCTTCCAAGGCCCCCTCGGACAGCCCGCGCAATCCCATCCCAGCTAGGACCAAGCTGCGTAAGGAAGCAAGGGGCTTAAAGTTGAGGTCTTGGATACTCTCTACTGGGTTCCCTCCAATCATCAGGACCTCCAGCTGCGGCAAAGCATGGAACCAGCGGCGGTCGATTATCACAAGCCGGTTGGAGTTGAGGTGCAGCCGCAAGAGGTTATCCAAACCACTGAAGGCCCCGGGTGAGATGTTCCTCAGCCGGTTGTGATTCAGGTATAGCTCCTGCAGTCCTGAGAGGCCAGAGAAAGCCGAGTCGGGAAGGTGTCTCAGCTGGTTCTCTTCCAGATGCAAGCTCAGCAGTCCTGGCAAGTCGGTGATCCTGAGATGTCTGGTGCTGCCGAAGCTGTTCTGGGAGAGGTCCAGCTCGGTCAGGTTGGCCAGGCCCTGCAGCTCGCTCTGGTCCAGGGCACTGATGAGGTTGCTCTGCAGGCGGAGAGTCTGAGTCTCTGCTGGCAGTGAGGCAGGGAGCTCAGACAACAGGAGGTCATTGCAGTCCACTGTGGGGGCTTCCCTGTACACCGAGCGCGGGGAATACCAGGGTTTGATCTGGCAGACGCACTGCCGGGGGCAGGGCACCTTCCAAGGCACAGAATGAATGACCAGAGCGCCGGCGACACCCAGGAGGAGGTGGGCTTGCACAAATCCGAGGCTGTGGGAACTCATTTTTGAAGAGAATGGATTAATAATTTAGATGGTGTAAAGAACATCAATTgctgtttcttttgtgtttatttaatcagttttgaATCCCCACTGTGAAAGAACAGGTGGATTTTATTTGTCGTTTTAGTTAttcaatatttcagtttgtgGGGGCAGGGGAGAAGTTTTGGTTTGGCTCCTCTGTACAATATTCAAACGCACACTTTCCCCTCAGGATGTTTAAATCATAGCTGGGTGTAGGATGTAGCAGCtcactgctttaaaaaagtaataaaaaaatagtccAGTCAGAGTGGAAATTGCAAACTGCTTACTTGCTTTAACATTGCTTGCAGAACTTTTTTCATCATAAAAATCCTTTTGGAAACCATATATTTTGTGATGCAATGCAGTGGTCTGTTCTGGTTGGTGGTCTTTTCCAATTCTTGTGTTTTCAACCCCCAGTATGTTATATATCCAAGGCTGTTACAGTCAGAATGCCTTCTGTTTAATTGGATAACAGCTGATAGATTTATCAAATTTGCTTTCCTTATAATCTTGTTGCCTTGGAATCAGGATGCGTGCCTGACTCTCTACGTGAtgaactgtatttttctctCATCCGTCACTTCGGTAGATGTTTTACATCCTGTAGGCTTGGAGTCTGGAGATGGGATGTCTCCCAATCAGG

Function

symbol description
lrrn2 Orthologous to human LRRN2 (leucine rich repeat neuronal 2).

NR:

description
PREDICTED: leucine-rich repeat neuronal protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59664 True 5029 lncRNA 0.47 1 47540563 47545591

Neighbor

gene id symbol gene type direction distance location
AMCG00013935 NA coding downstream 109084 47421308 ~ 47431479 (-)
AMCG00013936 NA coding downstream 124181 47410368 ~ 47416382 (-)
AMCG00013934 nfasc coding downstream 172501 47323711 ~ 47368062 (-)
AMCG00013933 NA coding downstream 250522 47275671 ~ 47290041 (-)
AMCG00013931 NA coding downstream 265734 47244382 ~ 47274829 (-)
AMCG00013938 mdm4,LOC107739268,LOC107675838,LOC107656004 coding upstream 6543 47552134 ~ 47564711 (-)
AMCG00013937 NA coding upstream 21512 47567103 ~ 47571775 (-)
AMCG00013940 LOC103386459,LOC108250956 coding upstream 37994 47583585 ~ 47623958 (-)
AMCG00013942 NA coding upstream 163622 47709213 ~ 47715995 (-)
AMCG00013944 NA coding upstream 303688 47849279 ~ 47857162 (-)
G47807 NA non-coding downstream 44879 47495411 ~ 47495684 (-)
G47766 NA non-coding downstream 313309 47225801 ~ 47227254 (-)
G47718 NA non-coding downstream 419962 47057539 ~ 47120601 (-)
G47717 NA non-coding downstream 465535 47071343 ~ 47075028 (-)
G47661 NA non-coding downstream 701799 46803611 ~ 46838764 (-)
G47839 NA non-coding upstream 144254 47689845 ~ 47694894 (-)
G47917 NA non-coding upstream 470970 48016561 ~ 48016838 (-)
G47991 NA non-coding upstream 633676 48179267 ~ 48179685 (-)
G47995 NA non-coding upstream 670284 48215875 ~ 48216209 (-)
G48021 NA non-coding upstream 723753 48269344 ~ 48270564 (-)
AMCG00013932 ruxe,snrpe other downstream 339666 47188595 ~ 47200897 (-)
G47666 NA other downstream 665193 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 1229445 46299161 ~ 46311118 (-)
G47501 NA other downstream 1377076 46160539 ~ 46163487 (-)
AMCG00013890 cacna1s other downstream 1457021 46075429 ~ 46083542 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 319259 47864850 ~ 47868863 (-)
G47896 NA other upstream 421834 47967425 ~ 47974915 (-)
AMCG00013964 NA other upstream 820452 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 910312 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 1272392 48817983 ~ 48821156 (-)

Expression


Co-expression Network