G47810


Basic Information

Item Value
gene id G47810
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47552159 ~ 47583902 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59667
agccggtgtattttgtttattaaacacatatttagaAAACACTGGGAAGTTCAAAACAGGATTAGCACTCATTTTCCAGCAAACACCCTCAAACGGGGTCAAACAATcaagtacattttcaatatgGCAGTGATGATTTTCAACACATAAGACACATTTCAAGAGCCCTGTAGGGAAGACCTTTCCCCCGACAGGGTCACAAACACTGGCAGTGATTGAGCTTTTGATCCAGAGGATGAGACAATAAAACTAGACACCTAGACCCGTGTGGTGCTCGACACAAACGGGTCCAAATACTGTCCGTGCCAGGATAGTGTGGCACCTAAGAGTCAAGAACGCAATAAAACTCCCGTTAAATGGCAGGCCGTTCCAGTTTGGGTTGTACCAGAGAAAATAAGTGGGCCGGTACTGCAAGTCCACATGGCTCTCTTTGAAAACATCATGAAAGTAAGGTTACCATCATGAAAAATGCATGGCCCACATAGCTGTCCGGGTAAGACAGCGCTTTGTCACGGGAAGACTTATTGCCACCCCTGTCCTCGGATACGTAATAAAAACCGTGCTAAATTAACTTCTCAGCCTGGAGCCGAGAATTAGCTGTGAAAAAGTGCTGGGTCAACTTGACCAGGAACAGAAAATAGCAAAGGAACCCAGACCAACCAAAGCAACGCATGTAAAAGGTTGTCAAACATGTGGCAATAAGATACAAAGCGCATTCGTCAGCGCTGAAGCCGCTCTCACGGCAGCATGCCCTTAACGGTTACACAgtaagcaaacacacacacacaacataactgTGGCGAATTCAAGTGCTCCGTTCAATAAAGTCCTTCAGTGCAACAGCTGATGGATGTAGGTGGAATCGTGGTTCAGGACATCCGCCGCCAAAACGGCAGCATTTCGTCAATACTGCTCGTGGCGCTGAATTTGTGAAAGTTGTACGTGAACAGACACCGACTAGATATAGATATCAGGGCGGGGGGGGGTTCAACGGGCTTCAGCGGGGGCTGCTTCaactgccctccacctcctgccatCCCCATCTTCATCAAAATCTACAGCAGGCTCATACAGCACAAGACAATGAGTCGGTTAACTCATTTAAACGAGTACATAAGCCcagggattattattatatccccccccccctacaAGCGTCACAAAAGCACAGCGTTGCATATTAAACAGCCTGCTGGAACTTGACGGCACTATCTGAACTACGCACGCCAGATTTCACAGCCGGCCGCATGCGCAAGCGAGATACTCGCATACGGCACAGAACAGCCTGTCGATCGGTCAACATCACGGAGCGAGAGATTAGACACCCATTATGTTACTCTTTAAAGAAGCTTCAGAGAGCAGATTCATTTTCTAAATCTccacatacattattttcttttatatatacaaagacAACACttttatacagaaaaaataaatagccgTTAATACTCCCGTCACGTCTGCGGGAGATCTGTACATTTCCCGACTTATCAGCGTCCCGGTGCGAACACCTGTTCTGGCTGAGATCACAGAGaaaagctttctttttcttctcgtcgttgttcttgttttccatctttccCTTAAGTTAGAATGGCTCCagaattgcagtggtctctctGCAGCCGCTCGGGATGggagcagaaataaatacaaataaaaccctGACCCCTGCTGCCTGGACTTCTCTctcacttcacacacacactgccaagTCTGTACCTAGAAACTAATGAAAGGACagcatgtgagagagagatctgaCTTGTGAGAAAGGTAGCTCCCGTGGTAACGCCAGCTGTTCAAATGGTCATACTGTAAGTGGGGGACAAGCGAGTCTTTAGTGGCCAAATCAGTATTGATTACCAGAGCAGTCTGCCTTCACAGTCCGCCGCCCACAGGCACGCTGGGCCACAAATTAAGCCAAATAAAACTAAACGACGATGGTGTGAGAGAACACAAGCAATTGAGGCAAATTAATCAGCACTTTGTTACAAAGAATAAACACTCTGCCCACAGGAACGGGGAGGGAGACGCTACGTCCAGGGGAACTACGCACAGCAACGAGATCAAAACTGCGGATTCAGGCAGCGATTCTGGAGCactattagtttaaaaaatattaaaaaattgGTCCGATGCACACACAGAAAGCAACCTGTACCTCGCACTCAGATCTCACAGCGTAGCTGCAGAGCGATGTCTGGTTGTGGCCAGCCTCAGCCACGGAGGTGGGAGGGGAGGCAAAGCCAGTGGCAGGAAGTGAGAATTGTCCAACAGTAAAGAAtagataaatatttacacaagaCTGACAACCACACCCCTCAAAGTTAAGTTTTGGAGAACAGCCATCAGCACCACcagactcactcacacactcaaatCTTTGGCACTGATTTTTAAGCATGTCAATTCAATACTGCTCTCTTACGGGGGTGAAATACATGCAGACTGAAAGCTGAAGGGGGGGTTTTGCTTCTGTTGGGAAGGGTCAGCCGGTTTGTTCTGTCTGGACAGCGAGAAAACCATCGGAGGCttccacaataaataaataaataccttccAGAttctttacataaaaaaaaaaaaaaaaaagtgttgtccatattaattattgaaaaattaaattaaaAattttggaaaaacaagaaagctTTTTATATTGTGCGCTTTATCGCATTTTGTCTGATTTGAACACGCTTTTGCACATAAATGATACAAAAAGAACCCCCACAATGCCCCCCATACAACcccaataagaaaaaaaaaaaaaacaattaaaaatggacTAGTTTGATGGGTGAACAGTacctaaagaaaaataaatataaccaagTATGAGTTTTACTTTACTTTGTAACATCATAGAGACAGCGGTTTACTTGCACTATACAGAAGACTAGAGATTCCAACAACAGCCACTTCTGCTGGGAGGAGAGCGATCACTTCAGTCTCCTTCGCCGGTGGATTTCGTCCACACTGCCACAATCCCAAACTGCTGACAggacttcccccccccccccagtatCAGAAAGGTACAGGCgtttgcacttaaaaaaaaaaacaaaaaaaactgtgtaaCAGTCCATTTCATCCAAGTAATATGACTTCCTCCTTAGATTTCCATCCGTAGTTAAGCACACAAAGTAAGAAAACTGAATGAAATATGcacaggttttttttcccctctttttttcCAGGACCTTCAGGAGTTATCATCACcaataaaagaagaaagcatGGCTTTTAGTTAAAGTTTTACAATCCAAACCAAAGAGGACTgacctggattttttttttttcccctcccttaTAATGGAGGGAATCAAAGAATCAAAATCCACAAGCAAGCTCGCATATTTATACCTATAACTTTGCTTGCATACAtgatttaaagaacaaaacaagcagacaGGGGTTTACATATTTTAGTAGTCAGATCCAAAGTTAATGGCGGCGTCGATGTTAAATGGCTTTAAACCTATTTTCTATTTCCAGAAAAGTACTGATTCATCTGAACTTCAGAAACAAAAGTATCGTCTATATGTGCAAGAGTGTGTGTTTCCACTCATACTTACAACCTAGTAATACTCCgacagtgaaaataaacagaacaacaacGTTCTACCCAAACTGGTTCGTCTTACAACCCATTACAAAAAAggattaccaaaaaaaaaaaaaaaagatgctgcCAAGATTGACAAGAAAAATGGACAGGAGGAAGGGCTGCCGAAGCTGCAGCAGAAAGCAGAAGCTCTCCTGTCCCCCCCCTCGTGCTAGCCTGGTTCCTGTGTACAAAGCAcccacgcacacgcacacgcacacgccctcacacgcactcacacaggcaCACGTCCTCCCGTGGACACCGCAGAGCGCGCCGGCCGGACGGGGGCATCTTTGAAAACCACGCTTTCCTCCGCAGAGAGAGCGCTTGCACTTCAGGGTTGGCGTCACAGCGTCCACAGTTCGGGGGTCGTCAGACCGAGGTCTCCAGGCTGTGTAGGGGGCTGTCGGGGGGCGTCGAGGCGGTGGACGAGCCGTGGGAGGGGGCCGCCACGACGTCCAGCGCGTTGTTGTTGCGGTTGGAGGTGTGACCCCCCGGGCCGCCTTTGGCTTTGGGGGGACCGGAGAGCCCCTCTAACTCAATGCTGCTTTCGTCGATTTTGGGGATACGGGATTCTTCTTCTGCCAGGGGGACAAACTCGGGATGGGACATGAAGTTATGGATGGAGCTTCTCGATTCGGGCTTTTCTAGGCCCTCATATAAGGAGCTACGGAATGCATTCACCACTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59667 True 4303 lncRNA 0.46 2 47552159 47583902

Neighbor

gene id symbol gene type direction distance location
AMCG00013939 lrrn2,LOC108425772 coding upstream 8725 47541233 ~ 47543434 (+)
AMCG00013924 etnk2,LOC106565623,LOC107694884 coding upstream 419983 47123708 ~ 47132176 (+)
AMCG00013917 NA coding upstream 467121 47077860 ~ 47085038 (+)
AMCG00013923 NA coding upstream 525185 47026485 ~ 47026974 (+)
AMCG00013918 NA coding upstream 539897 47010292 ~ 47012262 (+)
AMCG00013941 LOC106566646,LOC106571888 coding downstream 140532 47724434 ~ 47730274 (+)
AMCG00013953 NA coding downstream 502057 48085959 ~ 48097083 (+)
AMCG00013952 LOC108250382 coding downstream 515774 48099676 ~ 48143917 (+)
AMCG00013951 NA coding downstream 561496 48145398 ~ 48158245 (+)
AMCG00013960 NA coding downstream 643513 48227415 ~ 48234227 (+)
G47804 NA non-coding upstream 6568 47545192 ~ 47545591 (+)
G47797 NA non-coding upstream 130930 47421016 ~ 47421229 (+)
G47791 NA non-coding upstream 144607 47406616 ~ 47407552 (+)
G47767 NA non-coding upstream 293401 47256497 ~ 47258758 (+)
G47762 NA non-coding upstream 303170 47232054 ~ 47248989 (+)
G47936 NA non-coding downstream 474831 48058733 ~ 48059592 (+)
G47937 NA non-coding downstream 476013 48059915 ~ 48060814 (+)
G47958 NA non-coding downstream 578309 48162211 ~ 48162427 (+)
G47959 NA non-coding downstream 579969 48163871 ~ 48164673 (+)
G47960 LOC107654379,LOC107756628,LOC107573300,LOC107751188 non-coding downstream 580893 48164795 ~ 48165036 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 324190 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 478451 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 1592965 45943571 ~ 45959194 (+)
G47398 NA other upstream 1610253 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 1728931 45816372 ~ 45823228 (+)
AMCG00013943 NA other downstream 168312 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 655798 48239700 ~ 48258433 (+)
G48018 NA other downstream 684852 48268754 ~ 48269272 (+)
G48026 NA other downstream 697161 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 949984 48533886 ~ 48546200 (+)

Expression


Co-expression Network