G47936


Basic Information

Item Value
gene id G47936
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48058733 ~ 48059592 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59832
AATTTGACCCCTGAAGTTGTGCAGTCTGAATAGCTGTAGATCTGGTAGTAAAATAGCCTTTTTCTATTACTGCAATATAAGAAGTATTTTTTCCTCTGGTATAGTTGTAAAAGCAGTCAAGCAAAAGGATACCAAAAGGTAACTGCTTCCAAAGTTAGAAGTTTTCACCTACAAAAATACACAGACCCACCCACCCATACAAATACAGAGCATTACAATCAAATGCAGGCATTAATCATACAAAAGACAAGTCACAATCGCATCATAAAGATTGTCAAGTCTGCTATGGCCCATAGTGATTTTTAGCACGATACCACCCACACGGTGAACAGTAAGAGTAGTGCATCctgggaaaggaaaaaacacctTATAATTACACATGAATGAAGATAGGTTCAGTCTTGaatacttaaatacataaagaaatgtCTCTTATGCTGTAACACACGCCATAATCACATTTATTGAATCACCctgcagtgctttaaaaaaaaaaaaaactaaaaacggTATTTGAATGGTATTGCGAGCTTGTAGGCAGCTGTACAAATCCTCACGAAATCTCCCTGACAGTGATTGTAAATCTGGTTCAGATAAACACAGCATATACATTGCAGGGTCATGTTCCCTGGGTTTATGTTTAGGCACCATGAGAGCTAGTTTTAAGGAGGAGGAGGGTCCCAGGGGTTTGCACAGGGCAAGCACTGGGGCAAGATAGGTTGCATCTACAgcctgcagaaacacacactagACCCAGAGATTTGCAATTGGGCTTTACTCAtgatcttttaatttaattagaaagaTTGACCTAAACTGGGAAGGTACAGTAGACCTGGACTATTTTTCTGCAACTCTTG

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59832 True 860 lncRNA 0.39 1 48058733 48059592

Neighbor

gene id symbol gene type direction distance location
AMCG00013941 LOC106566646,LOC106571888 coding upstream 328459 47724434 ~ 47730274 (+)
AMCG00013939 lrrn2,LOC108425772 coding upstream 515299 47541233 ~ 47543434 (+)
AMCG00013924 etnk2,LOC106565623,LOC107694884 coding upstream 926557 47123708 ~ 47132176 (+)
AMCG00013917 NA coding upstream 973695 47077860 ~ 47085038 (+)
AMCG00013923 NA coding upstream 1031759 47026485 ~ 47026974 (+)
AMCG00013953 NA coding downstream 26367 48085959 ~ 48097083 (+)
AMCG00013952 LOC108250382 coding downstream 40084 48099676 ~ 48143917 (+)
AMCG00013951 NA coding downstream 85806 48145398 ~ 48158245 (+)
AMCG00013960 NA coding downstream 167823 48227415 ~ 48234227 (+)
AMCG00013962 NA coding downstream 177171 48236763 ~ 48239245 (+)
G47810 NA non-coding upstream 474831 47552159 ~ 47583902 (+)
G47804 NA non-coding upstream 513142 47545192 ~ 47545591 (+)
G47797 NA non-coding upstream 637504 47421016 ~ 47421229 (+)
G47791 NA non-coding upstream 651181 47406616 ~ 47407552 (+)
G47767 NA non-coding upstream 799975 47256497 ~ 47258758 (+)
G47937 NA non-coding downstream 323 48059915 ~ 48060814 (+)
G47958 NA non-coding downstream 102619 48162211 ~ 48162427 (+)
G47959 NA non-coding downstream 104279 48163871 ~ 48164673 (+)
G47960 LOC107654379,LOC107756628,LOC107573300,LOC107751188 non-coding downstream 105203 48164795 ~ 48165036 (+)
G47961 NA non-coding downstream 109047 48168639 ~ 48169640 (+)
AMCG00013943 NA other upstream 239010 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 830764 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 985025 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 2099539 45943571 ~ 45959194 (+)
G47398 NA other upstream 2116827 45934659 ~ 45941906 (+)
AMCG00013961 NA other downstream 180108 48239700 ~ 48258433 (+)
G48018 NA other downstream 209162 48268754 ~ 48269272 (+)
G48026 NA other downstream 221471 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 474294 48533886 ~ 48546200 (+)
G48142 NA other downstream 695361 48754953 ~ 48760712 (+)

Expression


Co-expression Network