G47937


Basic Information

Item Value
gene id G47937
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48059915 ~ 48060814 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59833
CTGCAGAGGTGAACAAAGGGAACATCTGTCATATAAAAACTCTGAGCGCTGGACCGTTCCCCCTGCTATGGCTTTTGCTTCACATTGATTTACCTGTCGCTGAAGTCAAACACTTTCTAAATGAGACGTATGGCTGGAGTTCTTTACCTGGTGCTCTCCAGTCACCGGGAAAATAGTATGTCTATGTACAGAACTCGATCAGATACAAAAACACGGTGACAGAAGCGGTGCATTGGAAACATGTCCATGTCACCTCAATCAGATTGAATATGCAAACTGTTGACTACAGACGCACTGGATCTTGTTCAACACGAGCtgcattacagtacattttttcagatctgtgcaaaaatacaagACATCAAATAAATCGAACAGCATATGGATTGACCAGCTCCATAGGCCTGGCAGGCAGCTCTCCTCTGAAACTCTGCCCTGATGTCCGATAACCCAGGTAGCTTTGCTTCCACGCTGTGGATCGCCCCAGGTGAACTTGAAATTAAATTGGAGACCTAGATTTGAATCTCCATTCACATGACCCAAGTACGGCTCAGTGCTCAGGGCATCTTTAGAAAGTTCAGTTTTAAAGCCTCCAGCAGCTACAGCCCTGCAGCCTAATGCACATGACTATCAAAACCGTCTTGTAGAGAGagtgagcgagcgagcgagagagatagagacagcgAAAGAGGGGGGGGAGCTAACACTTTTTATTCCTTTCCGATTAAAGCTACTTCCGCGCCTTGATTGGTCTTATATATATCATTACCTGCTCCCCGCGGTGTAAATTACACTCCGGGCCGGGGCTTTATTAGCCCCAGGCCTGTGTGAATTAGCAATCAAGCCCGAAGATAAGGTTCCCCCCTGTTCTGCCTTAACCCAAGCCTCCCCaccctccac

Function

NR:

description
PREDICTED: G-protein coupled receptor 182

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006816 calcium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59833 True 900 lncRNA 0.47 1 48059915 48060814

Neighbor

gene id symbol gene type direction distance location
AMCG00013941 LOC106566646,LOC106571888 coding upstream 329641 47724434 ~ 47730274 (+)
AMCG00013939 lrrn2,LOC108425772 coding upstream 516481 47541233 ~ 47543434 (+)
AMCG00013924 etnk2,LOC106565623,LOC107694884 coding upstream 927739 47123708 ~ 47132176 (+)
AMCG00013917 NA coding upstream 974877 47077860 ~ 47085038 (+)
AMCG00013923 NA coding upstream 1032941 47026485 ~ 47026974 (+)
AMCG00013953 NA coding downstream 25145 48085959 ~ 48097083 (+)
AMCG00013952 LOC108250382 coding downstream 38862 48099676 ~ 48143917 (+)
AMCG00013951 NA coding downstream 84584 48145398 ~ 48158245 (+)
AMCG00013960 NA coding downstream 166601 48227415 ~ 48234227 (+)
AMCG00013962 NA coding downstream 175949 48236763 ~ 48239245 (+)
G47936 NA non-coding upstream 323 48058733 ~ 48059592 (+)
G47810 NA non-coding upstream 476013 47552159 ~ 47583902 (+)
G47804 NA non-coding upstream 514324 47545192 ~ 47545591 (+)
G47797 NA non-coding upstream 638686 47421016 ~ 47421229 (+)
G47791 NA non-coding upstream 652363 47406616 ~ 47407552 (+)
G47958 NA non-coding downstream 101397 48162211 ~ 48162427 (+)
G47959 NA non-coding downstream 103057 48163871 ~ 48164673 (+)
G47960 LOC107654379,LOC107756628,LOC107573300,LOC107751188 non-coding downstream 103981 48164795 ~ 48165036 (+)
G47961 NA non-coding downstream 107825 48168639 ~ 48169640 (+)
G47972 NA non-coding downstream 118377 48179191 ~ 48179721 (+)
AMCG00013943 NA other upstream 240192 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 831946 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 986207 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 2100721 45943571 ~ 45959194 (+)
G47398 NA other upstream 2118009 45934659 ~ 45941906 (+)
AMCG00013961 NA other downstream 178886 48239700 ~ 48258433 (+)
G48018 NA other downstream 207940 48268754 ~ 48269272 (+)
G48026 NA other downstream 220249 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 473072 48533886 ~ 48546200 (+)
G48142 NA other downstream 694139 48754953 ~ 48760712 (+)

Expression


Co-expression Network