G47960 (LOC107654379,LOC107756628,LOC107573300,LOC107751188)


Basic Information

Item Value
gene id G47960
gene name LOC107654379,LOC107756628,LOC107573300,LOC107751188
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48164795 ~ 48165036 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59856
TCTCAATCACCTTGTCGTAGTAGTATCTCAGCGCGCGGCTCAGCTTGTCGTAGTTCATGCTGGGCTTGTTCTTACGGACGCCCCACAGCCGGGCCACCTCCTCCGCCTGCTGCAGCTTGAACTCCCCGTCCTCCGAGGTCCAGCAGATCAGACGCTCTTTGCTGGGGTCGAGGAGCAGCTGCAAGAGGAACTGCCAGAGAGTCACCGCGCTGTCCATGGCTGCAGGGCCAAGAGCGGGAAAG

Function

NR:

description
PREDICTED: ETS domain-containing protein Elk-4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59856 True 242 lncRNA 0.61 1 48164795 48165036

Neighbor

gene id symbol gene type direction distance location
AMCG00013951 NA coding upstream 6550 48145398 ~ 48158245 (+)
AMCG00013952 LOC108250382 coding upstream 20878 48099676 ~ 48143917 (+)
AMCG00013953 NA coding upstream 67712 48085959 ~ 48097083 (+)
AMCG00013941 LOC106566646,LOC106571888 coding upstream 434521 47724434 ~ 47730274 (+)
AMCG00013939 lrrn2,LOC108425772 coding upstream 621361 47541233 ~ 47543434 (+)
AMCG00013960 NA coding downstream 62379 48227415 ~ 48234227 (+)
AMCG00013962 NA coding downstream 71727 48236763 ~ 48239245 (+)
AMCG00013963 NA coding downstream 253221 48418257 ~ 48422793 (+)
AMCG00013969 NA coding downstream 325508 48490544 ~ 48494312 (+)
AMCG00013970 NA coding downstream 338133 48503169 ~ 48504611 (+)
G47959 NA non-coding upstream 122 48163871 ~ 48164673 (+)
G47958 NA non-coding upstream 2368 48162211 ~ 48162427 (+)
G47937 NA non-coding upstream 103981 48059915 ~ 48060814 (+)
G47936 NA non-coding upstream 105203 48058733 ~ 48059592 (+)
G47810 NA non-coding upstream 580893 47552159 ~ 47583902 (+)
G47961 NA non-coding downstream 3603 48168639 ~ 48169640 (+)
G47972 NA non-coding downstream 14155 48179191 ~ 48179721 (+)
G47980 NA non-coding downstream 35590 48200626 ~ 48202443 (+)
G47981 NA non-coding downstream 37490 48202526 ~ 48204819 (+)
G47983 NA non-coding downstream 41213 48206249 ~ 48206703 (+)
AMCG00013943 NA other upstream 345072 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 936826 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 1091087 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 2205601 45943571 ~ 45959194 (+)
G47398 NA other upstream 2222889 45934659 ~ 45941906 (+)
AMCG00013961 NA other downstream 74664 48239700 ~ 48258433 (+)
G48018 NA other downstream 103718 48268754 ~ 48269272 (+)
G48026 NA other downstream 116027 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 368850 48533886 ~ 48546200 (+)
G48142 NA other downstream 589917 48754953 ~ 48760712 (+)

Expression


Co-expression Network