G47980


Basic Information

Item Value
gene id G47980
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48200626 ~ 48202443 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59880
TAGGCTGAATCATGTTCAAATCACCCCTTTTAATGATCTGCACTGTAGGAGGACACTGCAAAGCTTTCTAACATGGCAGGAAACAgcacaagttttgttttgtttgtatccCCCCTCCCATAAGAAAAACTACAGGGATCAGTCAGCTTTTGTGCAGAAAAGGTCACATTCCTCTGTAGGTGCTTAGACACAACTAGTACAATGACAATTCCTGCGATCAATTCAGTTATAAACCAGTTAAACTGACAGATGGTCGAGCTGGAGATCACAGTTTGACAAGATAGTCCGTTACACCTGAAACAGGGAAATGCAATCCCCCCCCGATCTAAATGCAGCAGGAGGCGTTTCTACATGAACTCCCCcagcacacaagcacacaaaactGGAGACTTATATTTATACTTACACGGATATATGAGGGgccaatataaaaatacaaatcgtGTGTCATGAACGCATGCAACGCTGCAGCCGTCTCTAGAGAAACCCCTGGAAGGACGACTGCTGACGGACAAACTGGGtggttttcacatttcacaaaactgcCCATaaggaacacaaaaacaaaaatgtgttcccCTTAAAgcaggattaaaaaaatgatatacaaCTCCCAAGATGTGTTCAGCT
>TU59883
TAGGCTGAATCATGTTCAAATCACCCCTTTTAATGATCTGCACTGTAGGAGGACACTGCAAAGCTTTCTAACATGGCAGGAAACAgcacaagttttgttttgtttgtatccCCCCTCCCATAAGAAAAACTACAGGGATCAGTCAGCTTTTGTGCAGAAAAGGTCACATTCCTCTGTAGGTGCTTAGACACAACTAGTACAATGACAATTCCTGCGATCAATTCAGTTATAAACCAGTTAAACTGACAGATGGTCGAGCTGGAGATCACAGTTTGACAAGATAGTCCGTTACACCTGAAACAGGGAAATGCAATCCCCCCCCGATCTAAATGCAGCAGGAGGCGTTTCTACATGAACTCCCCcagcacacaagcacacaaaactGGAGACTTATATTTATACTTACACGGATATATGAGGGgccaatataaaaatacaaatcgtGTGTCATGAACGCATGCAACGCTGCAGCCGTCTCTAGAGAAACCCCTGGAAGGACGACTGCTGACGGACAAACTGGGtggttttcacatttcacaaaactgcCCATaaggaacacaaaaacaaaaatgtgttcccCTTAAAgcaggattaaaaaaatgatatacaaCTCCCAAGATGTGTTCAGCTGTTGCTTCGCAAAACACTCACCTTTAGCTGCAGTTTAGAGATTGAGGGTACTGCATTGGGGGGGGGTGTCTCTCCCTACACTCCTCTAAAGGGACAAACAAACTGTACTTGTACGTCAGGGTTAATAATGAAACCCCATTATGTGCATGAAACAGAATCCAAGCATCAGGCACCTCCCTGCCCGACGAGACACGATTGAGGaacagcagaggaaaaaaaatgtccatgactgaaaaccttaaaaacaaagactaaagcTCTGCACGCTTTCTTAAAAAGCTTTCGGggtgagaaacaaacaaaagcttgTATAGAtgagttttttcccccccccccatgttatttttaatctgcatttgTCCTTTGCAAGGAGCACACCAAGCCAAGTTGACCAGCGCAACCCCCCGCCTCTCATCAGATGAAGATACACAAGAACACACACTACTCGCATGTTACCACTCACACACAATAGAAGTTGAccattataaaaatgttcacGGTTTTAGATCAGTGGATGGGAAAAACATTTGTGGTTGTTCTCACAGTTGATACTCACTAACTAGACTGGAGCAGCGCGGGAGAAAAATCCCCACAGCACTGCCAATCACACCAGGCTCAAATCCCATTTAGGAAAAAGCTGTAAATCGATTTCAGCCGACAAAATAAGCCCACGTCGTTCTGGACACCTGGACCACGAGCATGACCTCGTTGGACACCCAAACCTAGGTCTACACATCCGAAGGAACCTATAGACAGACTTTTCAACAGTGCATGTGCATCTGCGGAGGAGACTGGGGCAAGAGGAGTGATGAAAACAAGATTTTCAGCCCAAAGAAGGCGTTTCTGGAGGTATTTACAATTTGATACAAGGTCTCGTCATGAACAATCACGGTTGCATCGGTACCGAGTCCCACACAGCGAGCCCCTGTAGAAGTGTAAGAGGCACAGTGTGTAGGGAAAAACATCACAGGCACAGTTTGACAGTTCATTCATCTCCGGCGTCATTAAAACTCTCGGACCATTAACATCAGGACCACAGGTGCCTCTCCACACATTTCAGCGATGAGACACTTGCCACTTGAGTAAAGAGAtgggtttttgttgttttttcataaaatcaagatacattttattttttttcttaaaaaacaaaccaaccaacattacaaaaaaaaaaaaaaaaaaaaN

Function

NR:

description
PREDICTED: uncharacterized protein LOC109098287

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59880 False 630 lncRNA 0.43 1 48200626 48201255
TU59883 True 1818 lncRNA 0.43 1 48200626 48202443

Neighbor

gene id symbol gene type direction distance location
AMCG00013951 NA coding upstream 42381 48145398 ~ 48158245 (+)
AMCG00013952 LOC108250382 coding upstream 56709 48099676 ~ 48143917 (+)
AMCG00013953 NA coding upstream 103543 48085959 ~ 48097083 (+)
AMCG00013941 LOC106566646,LOC106571888 coding upstream 470352 47724434 ~ 47730274 (+)
AMCG00013939 lrrn2,LOC108425772 coding upstream 657192 47541233 ~ 47543434 (+)
AMCG00013960 NA coding downstream 24972 48227415 ~ 48234227 (+)
AMCG00013962 NA coding downstream 34320 48236763 ~ 48239245 (+)
AMCG00013963 NA coding downstream 215814 48418257 ~ 48422793 (+)
AMCG00013969 NA coding downstream 288101 48490544 ~ 48494312 (+)
AMCG00013970 NA coding downstream 300726 48503169 ~ 48504611 (+)
G47972 NA non-coding upstream 20905 48179191 ~ 48179721 (+)
G47961 NA non-coding upstream 30986 48168639 ~ 48169640 (+)
G47960 LOC107654379,LOC107756628,LOC107573300,LOC107751188 non-coding upstream 35590 48164795 ~ 48165036 (+)
G47959 NA non-coding upstream 35953 48163871 ~ 48164673 (+)
G47958 NA non-coding upstream 38199 48162211 ~ 48162427 (+)
G47981 NA non-coding downstream 83 48202526 ~ 48204819 (+)
G47983 NA non-coding downstream 3806 48206249 ~ 48206703 (+)
G48007 NA non-coding downstream 50336 48252779 ~ 48253145 (+)
G48030 NA non-coding downstream 132114 48334557 ~ 48346350 (+)
G48055 NA non-coding downstream 183747 48386190 ~ 48386491 (+)
AMCG00013943 NA other upstream 380903 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 972657 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 1126918 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 2241432 45943571 ~ 45959194 (+)
G47398 NA other upstream 2258720 45934659 ~ 45941906 (+)
AMCG00013961 NA other downstream 37257 48239700 ~ 48258433 (+)
G48018 NA other downstream 66311 48268754 ~ 48269272 (+)
G48026 NA other downstream 78620 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 331443 48533886 ~ 48546200 (+)
G48142 NA other downstream 552510 48754953 ~ 48760712 (+)

Expression


Co-expression Network