G47981


Basic Information

Item Value
gene id G47981
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48202526 ~ 48204819 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59884
GAAATCAAAAACAGTGGCaggaaaagcaaattaaaataaaaaagcctggCGCAAGGGATTGAACTTGAACAACAAAACAGTCAATATACCGGTGCTGAGCGAGCACGGCTTATGCCCAACCCTAAAGCCACAACACACACCGGTCTGAGGACAACCTCGGAGCTCACGGGCGTCTCGACACTAAGCCAGGAAGAGGAagttcacacacagacagacagacaaaaggGACACTCGGGTCAGTACCAGCTCAGGCCTGACTGGCCCTCTGCCCCAGGATTTCGATACACAATCGGCACAGGGCTCTCCTGCCACGTGtagcataataaaaataagtcacTATCGCAgctctacatttatttatttctttaatgtttttatttaaacacctTTCAGGGATTAACCATTTCTGAGCTCGGTTTTATTGCAAAGACAATGAAgactaaagaaaaacaacattgccAACTATGcatgacagagagagatgcacgCTGTAACACACTGGCTTTATAGCAtctccccgccccccccccagttCAGATATATAGGTGGGGATGGGcaggaataattaaaaaaataaaataaatgatgcaatATACATTGAGATTcaacaatacacattttgaaagttccatcagaagaaacaaaaaaaacagcttacATGTCAAAGTTTCAAAAGAATATTTCCTGaCCCcgtgtggaaaaacaaaacaaggttgTTAACCGTTAGGTCCAGGTGTTTAAGCTCAGTGGTTTGGCAAATTAAATCCCACTTCCTTCAAACACTCGGACCTGGCACTGGCCAAGCGTGGGCTTGGACTGGGCTCGCTAATGCCGTAGGAGCGCAGCAGAGCAGAGCGCTGTCCGGCTTCACCGGAGAAGGATAGTGTTATACAAGGGGCTTCAACCAAGCAGGGGTCGAGAGCACAGCCGGGGACCCAGAGAGGAGCGGCCCGACTCCCCCCCGTCTGTAACAACACCCCGGACTCGATCACAGGACAGGCGCGGCCGGGTTACATTCACAGGAGTAcatctaacacacacactcacactcacactcacacactcactcacacctGGGCGGCACGGCTTTCACACTCAGAGCTGCACAGCACCGTCACTCGAGCGCCGGGCCGAACCTGACTGGGCCGATCGGGCTGGAATCCGTGTGGATTAATTAGCAGCTGGCAAATAAAACCAGGGGGCGTGATCGTCAGATAATCAGGTttttaaaggtttgtttttAGCGTTCATTGGCAGGTTCTCACAGCATGCAGAACTGGTCTTCGGTTAAAAGATACATGATAATAAGATTGGAAAGAAAGTTTAAAGTAATGAGATGGAAAAACACAGGGGACCTCACTCGTATGCAAGACGACTTGGGAACCTGTAAGTGGGTCCGAACTTCACGAATACTAGTTTTGTGTAGCTCTGGTCGCTCTACAGAAAATACTAGCTGGTGCTCAGGGTCCTACAGTGCCCCCCAGTAACGGCCTCCTGTGCATCTCCTGCTGACTGAACAACTCGTGACATTGGGGATTAAAAGTGATAtagaagcaaacaaaacaaatcaaccaGGACTAAGTTCATGCACCTGCATTGGTAAGATCTGCCCAGTTCAGtctcccacacacactctctctcacacagtgaAAGTCCTTTGAGATATGGTATTTACAAGCAAAACCgaaagaaaaagcacagatttaaaaacaaactgtccaAACCATTGAGCCAGGCTGACATcggaggggggggaggggaggagaatAGGAGGGGAAAAACGGGGGGaaacgaaaagaaaaaaggacGAGAGAGACTCCCACTGCAGCAGGGTTAGTCCTCCCCAGAAGGAGCTTCCTCTTCCgactcctcctcttcctcctcggCAGCTTCTTCCGCTTTCTTTGGGGGAGGGgactccttctccttcttcttcttctccaccaccacctcgggctcctcctcttcttcctcctcctcctcctcctcctcggggGGGCTCTccggctcctcctcctctttggAGGAGTAGGACTTCTCCGAGGCCTTAGCCGCGCTGGGCCtgcccttgcccttgcccttCATGGGGCTGGGGATCACTGCAGGACAGGGAGCGGGGGTTAGCGGACATACAAGATGCTGACTGAAAGGGGGACACAATGTATACAGAACAAAATCCCGTTGAGAGCAAACACGCGAGCAGGACCACAGGCACCCGGGCAGGAAAAACGGTTTCAGAACCAATTAGCACCACTCGATTTAAGATGCAGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59884 True 2273 lncRNA 0.50 2 48202526 48204819

Neighbor

gene id symbol gene type direction distance location
AMCG00013951 NA coding upstream 44281 48145398 ~ 48158245 (+)
AMCG00013952 LOC108250382 coding upstream 58609 48099676 ~ 48143917 (+)
AMCG00013953 NA coding upstream 105443 48085959 ~ 48097083 (+)
AMCG00013941 LOC106566646,LOC106571888 coding upstream 472252 47724434 ~ 47730274 (+)
AMCG00013939 lrrn2,LOC108425772 coding upstream 659092 47541233 ~ 47543434 (+)
AMCG00013960 NA coding downstream 22596 48227415 ~ 48234227 (+)
AMCG00013962 NA coding downstream 31944 48236763 ~ 48239245 (+)
AMCG00013963 NA coding downstream 213438 48418257 ~ 48422793 (+)
AMCG00013969 NA coding downstream 285725 48490544 ~ 48494312 (+)
AMCG00013970 NA coding downstream 298350 48503169 ~ 48504611 (+)
G47980 NA non-coding upstream 83 48200626 ~ 48202443 (+)
G47972 NA non-coding upstream 22805 48179191 ~ 48179721 (+)
G47961 NA non-coding upstream 32886 48168639 ~ 48169640 (+)
G47960 LOC107654379,LOC107756628,LOC107573300,LOC107751188 non-coding upstream 37490 48164795 ~ 48165036 (+)
G47959 NA non-coding upstream 37853 48163871 ~ 48164673 (+)
G47983 NA non-coding downstream 1430 48206249 ~ 48206703 (+)
G48007 NA non-coding downstream 47960 48252779 ~ 48253145 (+)
G48030 NA non-coding downstream 129738 48334557 ~ 48346350 (+)
G48055 NA non-coding downstream 181371 48386190 ~ 48386491 (+)
G48060 NA non-coding downstream 200784 48405603 ~ 48405818 (+)
AMCG00013943 NA other upstream 382803 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 974557 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 1128818 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 2243332 45943571 ~ 45959194 (+)
G47398 NA other upstream 2260620 45934659 ~ 45941906 (+)
AMCG00013961 NA other downstream 34881 48239700 ~ 48258433 (+)
G48018 NA other downstream 63935 48268754 ~ 48269272 (+)
G48026 NA other downstream 76244 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 329067 48533886 ~ 48546200 (+)
G48142 NA other downstream 550134 48754953 ~ 48760712 (+)

Expression


Co-expression Network