G48007


Basic Information

Item Value
gene id G48007
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48252779 ~ 48253145 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59921
GTGGCGATAAAGGCTgacttttatttcttatttcaaaATTCAACACCGatagaaagtttaaaaaataaaaccagttgtGTGTTACTTCTGATTTCAAATCAGCAGTTTACACGTGACAATCGTTAAGTGGGTACATAAAATAGACAATGCGAAAATAATATATAGGTCAGACTTGTGAAACatctttaattataaaattttgacattttgcatgtgtgtgaagaTACAATATATGTAAGGACTGATGAATGCTAAAACTCCTCCTACTTCTGTTGCATGAGAGGAAGGTTCTTGTGACAGGAGGAGACGGCACACAGTGAGGTGTGTAACAGAGGCAgtgttcaggtccctcagtacGCAGTGAGGN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59921 True 367 lncRNA 0.37 1 48252779 48253145

Neighbor

gene id symbol gene type direction distance location
AMCG00013962 NA coding upstream 13534 48236763 ~ 48239245 (+)
AMCG00013960 NA coding upstream 18552 48227415 ~ 48234227 (+)
AMCG00013951 NA coding upstream 94534 48145398 ~ 48158245 (+)
AMCG00013952 LOC108250382 coding upstream 108862 48099676 ~ 48143917 (+)
AMCG00013953 NA coding upstream 155696 48085959 ~ 48097083 (+)
AMCG00013963 NA coding downstream 165112 48418257 ~ 48422793 (+)
AMCG00013969 NA coding downstream 237399 48490544 ~ 48494312 (+)
AMCG00013970 NA coding downstream 250024 48503169 ~ 48504611 (+)
AMCG00013968 slc16a4,LOC106572850,LOC107591855 coding downstream 294109 48547254 ~ 48572929 (+)
AMCG00013977 NA coding downstream 342458 48595603 ~ 48598036 (+)
G47983 NA non-coding upstream 46076 48206249 ~ 48206703 (+)
G47981 NA non-coding upstream 47960 48202526 ~ 48204819 (+)
G47980 NA non-coding upstream 50336 48200626 ~ 48202443 (+)
G47972 NA non-coding upstream 73058 48179191 ~ 48179721 (+)
G47961 NA non-coding upstream 83139 48168639 ~ 48169640 (+)
G48030 NA non-coding downstream 81412 48334557 ~ 48346350 (+)
G48055 NA non-coding downstream 133045 48386190 ~ 48386491 (+)
G48060 NA non-coding downstream 152458 48405603 ~ 48405818 (+)
G48062 NA non-coding downstream 154338 48407483 ~ 48408809 (+)
G48073 NA non-coding downstream 202776 48455921 ~ 48456880 (+)
AMCG00013943 NA other upstream 433056 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 1024810 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 1179071 47037095 ~ 47073708 (+)
AMCG00013879 dennd2d other upstream 2293585 45943571 ~ 45959194 (+)
G47398 NA other upstream 2310873 45934659 ~ 45941906 (+)
G48018 NA other downstream 15609 48268754 ~ 48269272 (+)
G48026 NA other downstream 27918 48281063 ~ 48351285 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 280741 48533886 ~ 48546200 (+)
G48142 NA other downstream 501808 48754953 ~ 48760712 (+)
G48150 NA other downstream 523352 48776497 ~ 48778459 (+)

Expression


Co-expression Network