G48030


Basic Information

Item Value
gene id G48030
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48334557 ~ 48346350 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU59962
GTCAGTATCAGAGCAGAGTCTGAGTGCAGGAGCTCTCTTCACCCGGGACAGAGGACGACTCCACTGGACAGCACAGGGGTCTtgacCCCTATAGAAGGTGGTCCGACTCCTCATCactgacagagagcagaaggaCAGAACTGACGCTGCAGCGATGGGTGTGGAAGAGACACTGCGCTTACTGGGGGCCACTCTGCTCCTCCTGCCTGgagatgtccagcagtgccatcagctcagaactggcagaaaacagtgggaccctggtacacccatctact
>TU59964
GTCAGTATCAGAGCAGAGTCTGAGTGCAGGAGCTCTCTTCACCCGGGACAGAGGACGACTCCACTGGACAGCACAGGGtgacCCCTATAGAAGGTGGTCCGACTCCTCATCactgacagagagcagaaggaCAGAACTGACGCTGCAGCGATGGGTGTGGAAGAGACACTGCGCTTACTGGGGGCCACTCTGCTCCTCCTGCCTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59962 True 278 lncRNA 0.57 3 48334557 48346350
TU59964 False 207 lncRNA 0.58 2 48334557 48335268

Neighbor

gene id symbol gene type direction distance location
AMCG00013962 NA coding upstream 95312 48236763 ~ 48239245 (+)
AMCG00013960 NA coding upstream 100330 48227415 ~ 48234227 (+)
AMCG00013951 NA coding upstream 176312 48145398 ~ 48158245 (+)
AMCG00013952 LOC108250382 coding upstream 190640 48099676 ~ 48143917 (+)
AMCG00013953 NA coding upstream 237474 48085959 ~ 48097083 (+)
AMCG00013963 NA coding downstream 71907 48418257 ~ 48422793 (+)
AMCG00013969 NA coding downstream 144194 48490544 ~ 48494312 (+)
AMCG00013970 NA coding downstream 156819 48503169 ~ 48504611 (+)
AMCG00013968 slc16a4,LOC106572850,LOC107591855 coding downstream 200904 48547254 ~ 48572929 (+)
AMCG00013977 NA coding downstream 249253 48595603 ~ 48598036 (+)
G48007 NA non-coding upstream 81412 48252779 ~ 48253145 (+)
G47983 NA non-coding upstream 127854 48206249 ~ 48206703 (+)
G47981 NA non-coding upstream 129738 48202526 ~ 48204819 (+)
G47980 NA non-coding upstream 132114 48200626 ~ 48202443 (+)
G47972 NA non-coding upstream 154836 48179191 ~ 48179721 (+)
G48055 NA non-coding downstream 39840 48386190 ~ 48386491 (+)
G48060 NA non-coding downstream 59253 48405603 ~ 48405818 (+)
G48062 NA non-coding downstream 61133 48407483 ~ 48408809 (+)
G48073 NA non-coding downstream 109571 48455921 ~ 48456880 (+)
G48074 NA non-coding downstream 126030 48472380 ~ 48475448 (+)
G48018 NA other upstream 65285 48268754 ~ 48269272 (+)
AMCG00013961 NA other upstream 76124 48239700 ~ 48258433 (+)
AMCG00013943 NA other upstream 514834 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 1106588 47219919 ~ 47227969 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other upstream 1260849 47037095 ~ 47073708 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 187536 48533886 ~ 48546200 (+)
G48142 NA other downstream 408603 48754953 ~ 48760712 (+)
G48150 NA other downstream 430147 48776497 ~ 48778459 (+)
AMCG00013985 NA other downstream 474900 48821250 ~ 48828975 (+)
G48235 LOC105889183 other downstream 668279 49014629 ~ 49095546 (+)

Expression


Co-expression Network