G48055


Basic Information

Item Value
gene id G48055
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48386190 ~ 48386491 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60007
ggtacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaacacatttcaaaaaagttatacattgatttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggaggg

Function

GO:

id name namespace
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60007 True 302 lncRNA 0.38 1 48386190 48386491

Neighbor

gene id symbol gene type direction distance location
AMCG00013962 NA coding upstream 146945 48236763 ~ 48239245 (+)
AMCG00013960 NA coding upstream 151963 48227415 ~ 48234227 (+)
AMCG00013951 NA coding upstream 227945 48145398 ~ 48158245 (+)
AMCG00013952 LOC108250382 coding upstream 242273 48099676 ~ 48143917 (+)
AMCG00013953 NA coding upstream 289107 48085959 ~ 48097083 (+)
AMCG00013963 NA coding downstream 31766 48418257 ~ 48422793 (+)
AMCG00013969 NA coding downstream 104053 48490544 ~ 48494312 (+)
AMCG00013970 NA coding downstream 116678 48503169 ~ 48504611 (+)
AMCG00013968 slc16a4,LOC106572850,LOC107591855 coding downstream 160763 48547254 ~ 48572929 (+)
AMCG00013977 NA coding downstream 209112 48595603 ~ 48598036 (+)
G48030 NA non-coding upstream 39840 48334557 ~ 48346350 (+)
G48007 NA non-coding upstream 133045 48252779 ~ 48253145 (+)
G47983 NA non-coding upstream 179487 48206249 ~ 48206703 (+)
G47981 NA non-coding upstream 181371 48202526 ~ 48204819 (+)
G47980 NA non-coding upstream 183747 48200626 ~ 48202443 (+)
G48060 NA non-coding downstream 19112 48405603 ~ 48405818 (+)
G48062 NA non-coding downstream 20992 48407483 ~ 48408809 (+)
G48073 NA non-coding downstream 69430 48455921 ~ 48456880 (+)
G48074 NA non-coding downstream 85889 48472380 ~ 48475448 (+)
G48075 NA non-coding downstream 106554 48493045 ~ 48494039 (+)
G48026 NA other upstream 34905 48281063 ~ 48351285 (+)
G48018 NA other upstream 116918 48268754 ~ 48269272 (+)
AMCG00013961 NA other upstream 127757 48239700 ~ 48258433 (+)
AMCG00013943 NA other upstream 566467 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 1158221 47219919 ~ 47227969 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 147395 48533886 ~ 48546200 (+)
G48142 NA other downstream 368462 48754953 ~ 48760712 (+)
G48150 NA other downstream 390006 48776497 ~ 48778459 (+)
AMCG00013985 NA other downstream 434759 48821250 ~ 48828975 (+)
G48235 LOC105889183 other downstream 628138 49014629 ~ 49095546 (+)

Expression


Co-expression Network