G48073


Basic Information

Item Value
gene id G48073
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48455921 ~ 48456880 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60026
TCCCACCATGTTGTTGCTCCTGTCAAAGACGGAGTAGTACTCCCTGATGAAGACATCTCCCAGGATCCAGAGCTGACTGCCGCCATTGCCGAAGCCAGTGGAGCAGCCGCTGCTTCTCTGGAATACGTAGGCAGAGGAGGGCAGGGGGAAGTCAATCCCGTTGATGGTGAAAACCACACTGGGCATGTTTCCAATATTGTTGCAGTTCACCTGGGCTCCTCCCACCCAAGCATTGATGTTGCTGATGTCACTATTTGGCCCAACAACCAGAGAGGTAC

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU60026 True 278 lncRNA 0.54 3 48455921 48456880

Neighbor

gene id symbol gene type direction distance location
AMCG00013963 NA coding upstream 33128 48418257 ~ 48422793 (+)
AMCG00013962 NA coding upstream 216676 48236763 ~ 48239245 (+)
AMCG00013960 NA coding upstream 221694 48227415 ~ 48234227 (+)
AMCG00013951 NA coding upstream 297676 48145398 ~ 48158245 (+)
AMCG00013952 LOC108250382 coding upstream 312004 48099676 ~ 48143917 (+)
AMCG00013969 NA coding downstream 33664 48490544 ~ 48494312 (+)
AMCG00013970 NA coding downstream 46289 48503169 ~ 48504611 (+)
AMCG00013968 slc16a4,LOC106572850,LOC107591855 coding downstream 90374 48547254 ~ 48572929 (+)
AMCG00013977 NA coding downstream 138723 48595603 ~ 48598036 (+)
AMCG00013975 NA coding downstream 154762 48611642 ~ 48616152 (+)
G48062 NA non-coding upstream 47112 48407483 ~ 48408809 (+)
G48060 NA non-coding upstream 50103 48405603 ~ 48405818 (+)
G48055 NA non-coding upstream 69430 48386190 ~ 48386491 (+)
G48030 NA non-coding upstream 109571 48334557 ~ 48346350 (+)
G48007 NA non-coding upstream 202776 48252779 ~ 48253145 (+)
G48074 NA non-coding downstream 15500 48472380 ~ 48475448 (+)
G48075 NA non-coding downstream 36165 48493045 ~ 48494039 (+)
G48091 NA non-coding downstream 48991 48505871 ~ 48506198 (+)
G48093 NA non-coding downstream 57812 48514692 ~ 48514910 (+)
G48121 NA non-coding downstream 123091 48579971 ~ 48620338 (+)
G48026 NA other upstream 104636 48281063 ~ 48351285 (+)
G48018 NA other upstream 186649 48268754 ~ 48269272 (+)
AMCG00013961 NA other upstream 197488 48239700 ~ 48258433 (+)
AMCG00013943 NA other upstream 636198 47752214 ~ 47819723 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other upstream 1227952 47219919 ~ 47227969 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other downstream 77006 48533886 ~ 48546200 (+)
G48142 NA other downstream 298073 48754953 ~ 48760712 (+)
G48150 NA other downstream 319617 48776497 ~ 48778459 (+)
AMCG00013985 NA other downstream 364370 48821250 ~ 48828975 (+)
G48235 LOC105889183 other downstream 557749 49014629 ~ 49095546 (+)

Expression


Co-expression Network