G48142


Basic Information

Item Value
gene id G48142
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48754953 ~ 48760712 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60104
GGAGAGGGGGCTGTGGACGCTTCTTGCGTAACCCCACAGCTGCAAAATCTGATCTAGGACCAATCAGGCCTTTTCTTGTTCAATACCTCCTCTTATCGAGCACATCCAGCTCCTGCTCTGTAATCATGTTCTTTaaagttttcagattttaatttcctccacagcagaaaacaaataaacatctttAGACAACACgcagagaaaggaaaaggaatCATTGCAAAGGGATGGACTTTGAAAGTTTCGGTTTTAATGTGACAGTATGTGATTTTACACCAACacaaaagtgatttttaattCTCATTGATTTCTTTATTGGAAAAGATGGCGACAATAATCATGACTTTAAAAATAAGTGACTTATGCTTCCATGCACATCTCCAAAATttgtattctctttttttttcttcactcagtttccttttatttcatGATGGAAATGGAAGGTTAgattgttgctttttttcatttaaaaaccaaTGGAAAGATATACTGGAATGAGAGGGTGATAGTCCATCttcagagaaataataataaaaatcatcatCACACACAAATCATAGAACACGTCACAGTCGACTGTGGAGTTTGCATTCGTCAGGCCAATGGCTCCTAATTAAAAAcgttataatttgttttaagcaAATGATCAACATTAACACTACATTTGCCCGAGCAGGGCTGCACTAAGATCCCATATGAAATCATTCAGGTAAAAAGGAACCATAGCAAAATAACGACACCAAGGCAATCGAGTGTCGTCGGTCACAGTGGCTGTAGCGATTGCCCGTCTCTGTGAAAACCACCAGAGAACAATGCACACCGGGGGGAACTCACAAGAGCCACGCACTACAATGTCCGACACACAAACCTAAccctctgaaaaacaaacacaaaacaacttctgttctttaaaaatcTTTGACATTTctaccattttcttttcttcaacagaattaaattaaatgatataAAAATAGCTGGCCTTGCGAGCTCCTCCCCCCCAGTCAGTGTGCACTTCAAGGCAAGAACAAAGATTAATTATCAGCTGTTTTTAATGgcattgtctgtctgtctgtctgtctgtgcgttTTGGTTTGACACCAGCAGGAGCCGAGAGAAGCACTGGAGCCAGAGAGCAGggcccggcccggcccagcAGCACAAGAAAGCTACCAGCAGTGATGCTTATGGGAAGGAGCGAGTGCATCCGGACCGAACCACCGCAGCTGCTCCCGAGTCTCTGCGGGTTCTGTGCGTAGGCGGCTCAATGTTTGGATTCAATCTGAGCAACTCTGCAAGCGGGGAGGGGAGGGGCCTGTCACACGGGTCTCAGAGACGGAAGAACAGaaactgtttaataaaatacaccgTTACAAACAGAAAGAAGAGCAAACAGTCAGTTAATGACTATTGCACGGGGGGTCGCAGCTATGGAGATGTGAAACAACCAGGATGCTTCCACAGACTCCAAAACAGGACGTGAAGGGCAGACAGGGCACTAGGGGGAGGAGACAGAGGACAGGGGACAGACAGGGCACTAGAGGGAGGAGACAGAcaggggacagggacagggttGGTGGGGTCAGAAAGGCACAGCCACACAGCTTGTACCCCTGGGGCCTCAGCCTGGGGTCCCTGTGTTGAGTATGTGGTCTGAGCCACATGATTGGTCGACTGGTTTGTGGTTGGTCTCGGTTGTGGCAGCTGAGGCTGGGGCCGCACAACTCCTGCTGCTTAAAGGCCTTAGGTGTGGATCGTACCCCCCCCAACTCTCAGCTGCTCAACTCAATTCAATAATTAGTTCATCTTATTAATCTACGTATATGGCAACACAGGCATGGACTGACACCCCTGCTTGGACCTGAGAGGTGAAAGGTCAAgctcaaccccccccccctccacagcGCTCTGGGCGACACACAGCAGAGCAACTCAACAGCTAGAAGACACCTTTACAGTTCAAGTCTGAagattaaaacactttttgtcCTTAAACTCGtccatttcacttttttatctCAGAACAATTAGGAATATTTCCAACTCGCCTACTTACTCTATCTGTCTATATCTACCCATCTAACCTCATTGCTCTTCATTTTGAATGgctattttttcaaatataaatatatttagaatgtataatttattattaatctttttgttccttttgtttaaactgtttaaaatgtgcgCTGGTGCAGCGAGTGTCGGGAAGCAGTGTGGGGGAACAGACGGCGGCGAGGAAGGACATTAAGGACATATAAGGTCAGAGAGGATTCggcacagaaacaaaataataacaatcaaaaGACACAcgtcaaattattaaaaaagatttaaaaaaacccCATTGTAAACGGGGCATCGATTCGCCAGATACCACGCTAAAATAAATCGTCCAGAATGTCTGTGGTCTAGATGCCTACTATGACATCACAGAGAGCCTAAGAGGGTGGGTGGGACAGAGGGCTGGAGTCAGACAACCAgcctgacagacacacacacacacacacacacacacacacacactcacacagacagacagccagacagacacacacagccggacaaacagacacacacagagacagacatggACACAGCAGTAATAAGCACTACACCAACCCCACACAGCGCAACAACTATTTAAGCAAAATACCTGTTATTGTGTAATTAGTAAAGGTTGCCGTTGCACACCGTGGCGCCCTCATCCAGAAGCACAGCTCAAGTGATCTGTGCAATATGAATAACAATCATGACAATCACAGTAATAATAGTCAGAGTCTGCTCTGCAGGGGGTCAGCGGTCCAGACCTCTGTCCCACAGTCTCTCAGTGTGGAATGTGTGTTGAGCTTTGAAAGTGCAAAGACATTAAACgagaataatcataataatacaagaaaaatcGAACTGGATCAGAACCTCCACTAACAGATTGCTTGGCaccatttcaagttatttcacaAACAGCCTACATTTCTGATTGtctttcaaattatataattttgcttttgttttaaagtggaTTAACAAATAAACGATAGAAGATAAAGTGTTTAGCGGGGGGGCTGAAGCGGCTGCAGAGTCCGAGGGGGCCGGTGGGGGGGGTGAGAAGtgaaacaaagtacaaaaatgaaatgaaatgaaaaactaaaaatgaaatgaaaatgtaaaatctctCGCTCGTTTGTTGTCGGAGTATTTCCCCCTCGAGGTCTTCCGAGCCCCCTCCGCCTGGGACCCCCCCACTCCGTAGACATGGTGGTCGTCTGGACTTTACTGCCATTGTCCGCAA
>TU60105
GGAGAGGGGGCTGTGGACGCTTCTTGCGTAACCCCACAGCTGCAAAATCTGATCTAGGACCAATCAGGCCTTTTCTTGTTCAATACCTCCTCTTATCGAGCACATCCAGCTCCTGCTCTGTAATCATGTTCTTTaaagttttcagattttaatttcctccacagcagaaaacaaataaacatctttAGACAACACgcagagaaaggaaaaggaatCATTGCAAAGGGATGGACTTTGAAAGTTTCGGTTTTAATGTGACAGTATGTGATTTTACACCAACacaaaagtgatttttaattCTCATTGATTTCTTTATTGGAAAAGATGGCGACAATAATCATGACTTTAAAAATAAGTGACTTATGCTTCCATGCACATCTCCAAAATttgtattctctttttttttcttcactcagtttccttttatttcatGATGGAAATGGAAGGTTAgattgttgctttttttcatttaaaaaccaaTGGAAAGATATACTGGAATGAGAGGGTGATAGTCCATCttcagagaaataataataaaaatcatcatCACACACAAATCATAGAACACGTCACAGTCGACTGTGGAGTTTGCATTCGTCAGGCCAATGGCTCCTAATTAAAAAcgttataatttgttttaagcaAATGATCAACATTAACACTACATTTGCCCGAGCAGGGCTGCACTAAGATCCCATATGAAATCATTCAGGTAAAAAGGAACCATAGCAAAATAACGACACCAAGGCAATCGAGTGTCGTCGGTCACAGTGGCTGTAGCGATTGCCCGTCTCTGTGAAAACCACCAGAGAACAATGCACACCGGGGGGAACTCACAAGAGCCACGCACTACAATGTCCGACACACAAACCTAAccctctgaaaaacaaacacaaaacaacttctgttctttaaaaatcTTTGACATTTctaccattttcttttcttcaacagaattaaattaaatgatataAAAATAGCTGGCCTTGCGAGCTCCTCCCCCCCAGTCAGTGTGCACTTCAAGGCAAGAACAAAGATTAATTATCAGCTGTTTTTAATGgcattgtctgtctgtctgtctgtctgtgcgttTTGGTTTGACACCAGCAGGAGCCGAGAGAAGCACTGGAGCCAGAGAGCAGggcccggcccggcccagcAGCACAAGAAAGCTACCAGCAGTGATGCTTATGGGAAGGAGCGAGTGCATCCGGACCGAACCACCGCAGCTGCTCCCGAGTCTCTGCGGGTTCTGTGCGTAGGCGGCTCAATGTTTGGATTCAATCTGAGCAACTCTGCAAGCGGGGAGGGGAGGGGCCTGTCACACGGGTCTCAGAGACGGAAGAACAGaaactgtttaataaaatacaccgTTACAAACAGAAAGAAGAGCAAACAGTCAGTTAATGACTATTGCACGGGGGGTCGCAGCTATGGAGATGTGAAACAACCAGGATGCTTCCACAGACTCCAAAACAGGACGTGAAGGGCAGACAGGGCACTAGGGGGAGGAGACAGAGGACAGGGGACAGACAGGGCACTAGAGGGAGGAGACAGAcaggggacagggacagggttGGTGGGGTCAGAAAGGCACAGCCACACAGCTTGTACCCCTGGGGCCTCAGCCTGGGGTCCCTGTGTTGAGTATGTGGTCTGAGCCACATGATTGGTCGACTGGTTTGTGGTTGGTCTCGGTTGTGGCAGCTGAGGCTGGGGCCGCACAACTCCTGCTGCTTAAAGGCCTTAGGTGTGGATCGTACCCCCCCCAACTCTCAGCTGCTCAACTCAATTCAATAATTAGTTCATCTTATTAATCTACGTATATGGCAACACAGGCATGGACTGACACCCCTGCTTGGACCTGAGAGGTGAAAGGTCAAgctcaaccccccccccctccacagcGCTCTGGGCGACACACAGCAGAGCAACTCAACAGCTAGAAGACACCTTTACAGTTCAAGTCTGAagattaaaacactttttgtcCTTAAACTCGtccatttcacttttttatctCAGAACAATTAGGAATATTTCCAACTCGCCTACTTACTCTATCTGTCTATATCTACCCATCTAACCTCATTGCTCTTCATTTTGAATGgctattttttcaaatataaatatatttagaatgtataatttattattaatctttttgttccttttgtttaaactgtttaaaatgtgcgCTGGTGCAGCGAGTGTCGGGAAGCAGTGTGGGGGAACAGACGGCGGCGAGGAAGGACATTAAGGACATATAAGGTCAGAGAGGATTCggcacagaaacaaaataataacaatcaaaaGACACAcgtcaaattattaaaaaagatttaaaaaaacccCATTGTAAACGGGGCATCGATTCGCCAGATACCACGCTAAAATAAATCGTCCAGAATGTCTGTGGTCTAGATGCCTACTATGACATCACAGAGAGCCTAAGAGGGTGGGTGGGACAGAGGGCTGGAGTCAGACAACCAgcctgacagacacacacacacagacacacacacacacacacagacacacactcacacagacagacagccagacagacacacacacacacacacacactcacacagacagacagccagacagacacacacagccggacaaacagacacacacagagacagacatggACACAGCAGTAATAAGCACTACACCAACCCCACACAGCGCAACAACTATTTAAGCAAAATACCTGTTATTGTGTAATTAGTAAAGGTTGCCGTTGCACACCGTGGCGCCCTCATCCAGAAGCACAGCTCAAGTGATCTGTGCAATATGAATAACAATCATGACAATCACAGTAATAATAGTCAGAGTCTGCTCTGCAGGGGGTCAGCGGTCCAGACCTCTGTCCCACAGTCTCTCAGTGTGGAATGTGTGTTGAGCTTTGAAAGTGCAAAGACATTAAACgagaataatcataataatacaagaaaaatcGAACTGGATCAGAACCTCCACTAACAGATTGCTTGGCaccatttcaagttatttcacaAACAGCCTACATTTCTGATTGtctttcaaattatataattttgcttttgttttaaagtggaTTAACAAATAAACGATAGAAGATAAAGTGTTTAGCGGGGGGGCTGAAGCGGCTGCAGAGTCCGAGGGGGCCGGTGGGGGGGGTGAGAAGtgaaacaaagtacaaaaatgaaatgaaatgaaaaactaaaaatgaaatgaaaatgtaaaatctctCGCTCGTTTGTTGTCGGAGTATTTCCCCCTCGAGGTCTTCCGAGCCCCCTCCGCCTGGGACCCCCCCACTCCGTAGACATGGTGGTCGTCTGGACTTTACTGCCATTGTCCGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60104 False 3301 TUCP 0.45 3 48754953 48760712
TU60105 True 3355 TUCP 0.45 2 48754953 48760712

Neighbor

gene id symbol gene type direction distance location
AMCG00013978 NA coding upstream 28695 48715370 ~ 48726258 (+)
AMCG00013975 NA coding upstream 138801 48611642 ~ 48616152 (+)
AMCG00013977 NA coding upstream 156917 48595603 ~ 48598036 (+)
AMCG00013968 slc16a4,LOC106572850,LOC107591855 coding upstream 182024 48547254 ~ 48572929 (+)
AMCG00013970 NA coding upstream 250342 48503169 ~ 48504611 (+)
AMCG00013989 NA coding downstream 27761 48788473 ~ 48790311 (+)
AMCG00013983 psma5 coding downstream 54054 48814766 ~ 48816208 (+)
AMCG00013984 NA coding downstream 72633 48833345 ~ 48838141 (+)
AMCG00013982 NA coding downstream 78819 48839531 ~ 48843626 (+)
AMCG00013988 NA coding downstream 126042 48886754 ~ 48888169 (+)
G48134 strip1 non-coding upstream 8812 48685967 ~ 48746141 (+)
G48121 NA non-coding upstream 134615 48579971 ~ 48620338 (+)
G48093 NA non-coding upstream 240043 48514692 ~ 48514910 (+)
G48091 NA non-coding upstream 248755 48505871 ~ 48506198 (+)
G48075 NA non-coding upstream 260914 48493045 ~ 48494039 (+)
G48155 NA non-coding downstream 31275 48791987 ~ 48795514 (+)
G48167 NA non-coding downstream 61989 48822701 ~ 48823613 (+)
G48171 NA non-coding downstream 85352 48846064 ~ 48851011 (+)
G48173 NA non-coding downstream 93274 48853986 ~ 48854363 (+)
G48236 NA non-coding downstream 266456 49027168 ~ 49050298 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other upstream 208753 48533886 ~ 48546200 (+)
G48026 NA other upstream 403668 48281063 ~ 48351285 (+)
G48018 NA other upstream 485681 48268754 ~ 48269272 (+)
AMCG00013961 NA other upstream 496520 48239700 ~ 48258433 (+)
AMCG00013943 NA other upstream 935230 47752214 ~ 47819723 (+)
G48150 NA other downstream 15785 48776497 ~ 48778459 (+)
AMCG00013985 NA other downstream 60538 48821250 ~ 48828975 (+)
G48235 LOC105889183 other downstream 253917 49014629 ~ 49095546 (+)
G48231 NA other downstream 316030 49076742 ~ 49100458 (+)
AMCG00013996 NA other downstream 584385 49345097 ~ 49348601 (+)

Expression


Co-expression Network