G48167


Basic Information

Item Value
gene id G48167
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 48822701 ~ 48823613 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60139
CATACATACACTACACACtcgtacatacacacatacattacacactacacacacacactacacacatacattacacactcatatacacactgacactacacatacactacacactgacactacacactcatacacacactacacacacactcacacatacattacacactcatacacacacagactacacacacacacacacacttattataatttttatttcttggcagacgcccttatccagggcgacttacaacataaaacaaagtacaaagaTTCAGTtaggtaaaggcatcaatcattacaaattcaatctaactaaaacatagcaattcaaaacaatacattttacaaattacaatttacacaaagtacagtaagtgaggtcctacaccCTGGACGGTACTGTCAAGGCCTGCGGGAAGGGGAGCAAGGAGGACAACATAATAACTGAGAAGTGCtgtctaacggggattaaagcTCTGTGGGAAAGTACGAGCACAGCTGGCACGGTGTGGCACATGCTGCCTGCCCGGGGCTGGTGTCCGTGTCTGGGCGGGACAGGGAGGCAGAGACGCGGCTGTGTGCCCGCTGTGTGCCCGCTGTGTACCCCGGCGCTCCTcgcctctctgtctctgtcgtTTTGTAGTTGTtcgtgtgtttgtgttggaggTTTGTGACGACTTTAAATCGCACAGGCCGTTGCTGAAATGTCTTGCATGTGTGAAACGTGGCTTTGGGACTTGCTGTAGAACAGAAATCAGACATAATGTATCATCCACAGACTCCACAATAAGCCCCGCACTGCGGCCTCCGCTGCGAGCTGCGTGTCGGTGCGGCGGCTC

Function

GO:

id name namespace
GO:0051129 negative regulation of cellular component organization biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0051983 regulation of chromosome segregation biological_process
GO:0051985 negative regulation of chromosome segregation biological_process
GO:0010639 negative regulation of organelle organization biological_process
GO:0000819 sister chromatid segregation biological_process
GO:2001251 negative regulation of chromosome organization biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:1905818 regulation of chromosome separation biological_process
GO:1905819 negative regulation of chromosome separation biological_process
GO:0010948 negative regulation of cell cycle process biological_process
GO:1902099 regulation of metaphase/anaphase transition of cell cycle biological_process
GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle biological_process
GO:0031577 spindle checkpoint biological_process
GO:0010965 regulation of mitotic sister chromatid separation biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0051783 regulation of nuclear division biological_process
GO:0051784 negative regulation of nuclear division biological_process
GO:0044784 metaphase/anaphase transition of cell cycle biological_process
GO:0045839 negative regulation of mitotic nuclear division biological_process
GO:0045841 negative regulation of mitotic metaphase/anaphase transition biological_process
GO:2000816 negative regulation of mitotic sister chromatid separation biological_process
GO:0007059 chromosome segregation biological_process
GO:0071173 spindle assembly checkpoint biological_process
GO:0071174 mitotic spindle checkpoint biological_process
GO:0051304 chromosome separation biological_process
GO:0051306 mitotic sister chromatid separation biological_process
GO:0007088 regulation of mitotic nuclear division biological_process
GO:0007091 metaphase/anaphase transition of mitotic cell cycle biological_process
GO:0007094 mitotic spindle assembly checkpoint biological_process
GO:0033044 regulation of chromosome organization biological_process
GO:0033045 regulation of sister chromatid segregation biological_process
GO:0033046 negative regulation of sister chromatid segregation biological_process
GO:0033047 regulation of mitotic sister chromatid segregation biological_process
GO:0033048 negative regulation of mitotic sister chromatid segregation biological_process
GO:0030071 regulation of mitotic metaphase/anaphase transition biological_process
GO:1901987 regulation of cell cycle phase transition biological_process
GO:1901988 negative regulation of cell cycle phase transition biological_process
GO:1901990 regulation of mitotic cell cycle phase transition biological_process
GO:1901991 negative regulation of mitotic cell cycle phase transition biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60139 True 845 lncRNA 0.47 2 48822701 48823613

Neighbor

gene id symbol gene type direction distance location
AMCG00013983 psma5 coding upstream 6493 48814766 ~ 48816208 (+)
AMCG00013989 NA coding upstream 32390 48788473 ~ 48790311 (+)
AMCG00013978 NA coding upstream 96443 48715370 ~ 48726258 (+)
AMCG00013975 NA coding upstream 206549 48611642 ~ 48616152 (+)
AMCG00013977 NA coding upstream 224665 48595603 ~ 48598036 (+)
AMCG00013984 NA coding downstream 9732 48833345 ~ 48838141 (+)
AMCG00013982 NA coding downstream 15918 48839531 ~ 48843626 (+)
AMCG00013988 NA coding downstream 63141 48886754 ~ 48888169 (+)
AMCG00013995 NA coding downstream 73189 48896802 ~ 48904030 (+)
AMCG00013992 gnai1,LOC105897337,LOC108442115,LOC108265813,LOC100706147,LOC107590838,LOC108279833 coding downstream 84524 48908137 ~ 48913068 (+)
G48155 NA non-coding upstream 27187 48791987 ~ 48795514 (+)
G48134 strip1 non-coding upstream 76560 48685967 ~ 48746141 (+)
G48121 NA non-coding upstream 202363 48579971 ~ 48620338 (+)
G48093 NA non-coding upstream 307791 48514692 ~ 48514910 (+)
G48091 NA non-coding upstream 316503 48505871 ~ 48506198 (+)
G48171 NA non-coding downstream 22451 48846064 ~ 48851011 (+)
G48173 NA non-coding downstream 30373 48853986 ~ 48854363 (+)
G48236 NA non-coding downstream 203555 49027168 ~ 49050298 (+)
G48243 NA non-coding downstream 244492 49068105 ~ 49112083 (+)
G48353 NA non-coding downstream 629420 49453033 ~ 49453872 (+)
G48150 NA other upstream 44242 48776497 ~ 48778459 (+)
G48142 NA other upstream 61989 48754953 ~ 48760712 (+)
AMCG00013971 lamtor5,xip,LOC106566397,LOC107668015 other upstream 276501 48533886 ~ 48546200 (+)
G48026 NA other upstream 471416 48281063 ~ 48351285 (+)
G48018 NA other upstream 553429 48268754 ~ 48269272 (+)
G48235 LOC105889183 other downstream 191016 49014629 ~ 49095546 (+)
G48231 NA other downstream 253129 49076742 ~ 49100458 (+)
AMCG00013996 NA other downstream 521484 49345097 ~ 49348601 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other downstream 714441 49538054 ~ 49545335 (+)
AMCG00014021 NA other downstream 790088 49613701 ~ 49620027 (+)

Expression


Co-expression Network