G48354


Basic Information

Item Value
gene id G48354
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49453984 ~ 49456698 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60389
GAGTTGAGACGCTGTCAGAGAAACTGAAACCCAGCCGCTCTGAATAACACTCACAGCGCCTCTGTCTTTGTAAGAATTTGGTTTAAAGTCACTTTATTCAAGAAagcccattaaaaaaaaaaagtttttaaattattattttttttttttaaaaaggaatttttaaaagaatgtacatattatttaacataataataacaccacCGAGAGATGTAATAAACTCTTATTCGGTAACTATTCAACCAAATCTGACCACATATTTTCTGCATACATTACCAAAAGAGATGCTTTaaaccccccccaaccccaaaaaagtgcaaaattaaGGTGATGTAAACAAAAAGGCAACAGAGACTTCACTACGGACGGGGTCTGTGGATGTCCAGTCTTGGACCATCGCAAGTGTTCcccagacaaacaaacaaaaacaatcataaagGACCCCCCAATGAAAAAgcaattgtatatttttcttgcTGCGCTCTGATCGCTGCCCACCTCCCGCCCACCGTGCCCACCCCCCCGGGGAGGTGAAGAGGGAGAGCGAGGGTGGTGAGGGACAGGAGTGCATTCTGGGAGCAAGCGAGTGAGCGCATACGACTGACAGCAGCGACGATCGGAGCAgccactacacacactacactaacAGCAGCCATTAGACAGACTGGCGAACTGAGCTCGGCCTCTCAGGGACACAGACCTGCGTCGCTGTGTTTAGTAAACATACAAACCATTGCAGGGCTCATCTGTATATACAGGTTTAGTAAAGACAGACTGGCAGCAACCTGTGCCCCCAGCTGGTTTTAGCGTTTGGAAAAGTCACGGTATTCGAATACGCTGCCCCCACAAGGGCAGGAGGCGTAGTGTCCAGAACCCGACCGGACCCCCTCAGCCTCGCCCTCGCCCACCCGGCCCGGGCGTTCCACACAGATACCACAGGGCTGGGCACAGCGGTCCGCCGGACAGGCCATCGATACAAAAGGACattatttacagaaacatcCACGTGTCTCGAAATTGTGAGCTGAACGCAAAGTCTCGAGAAAATAATAAGTAGATATTCatggtgtgtgcgtgtgcgtgcatgtTTTAACCCCTCCCCCGACCGAGCTccccgccccctctctctcagcgcTGGACCATGGCTGAACTCTAAGCTGCTGAGCTGGTTCACCTCATTAGTGAATGTGTCCCCCTGCTGCCTGTGGAGAACCATGGACAGAGGGCGAGGGACCGGATCCACAAACAATCCATCAAAGccagttgtaaaataaatacgcGCTCAAGCGGAGTCCCGTCCTGAACAAGAGACTCCAAGGGGACAGTGGGGTTACTGTGGGCTTACGGCTGCGCTATGGTGGCGTCACTGCAAGTCTCTCAACAGCTCATGAATCTTTGGAATTAAAGGAGAAATGCAGCCGGATATTTAATTGAAGAATTAGTACAAAAACCTCATGAGGATAATAAAGCGCTGTCTTGTGTTGAGCccgcacagcccagcacagggGTCTCAATGCAGGCCAGATCCAATTAAATGTGAATAAGACGTCTGTacgcacccccctccccctctcaagtatgtgcatgtgtgtgtatacacatatatatatatatatatatatatatatatataattacacacacagacacacacacaaacacacaaatatacacacgtATAGATAGTCTACctttattatttcagtaaaaCATCCATGCAGTTAAGTGGTTTATATTCTCTATACACCGCGACTGAGGACTGCAGAAGCACCAAACAGACCAAATGAGATGCAAAATATCAGACTtcaacatcataataataatacattataacgcacacatatatatgtgtatatatatatatatcgagtTTCACGATAGGCCAGATCTGTCACCTGATCAGCTCACCAAAGTTCCGCCACCAGAAAACACAGCATTCTCATTGGCTGACACTTGTCCAATCACAACAGGGCAATCCCCTCCATGTTACTATCCCTAGACTCTGCCGGCTCGGCCCTGAACCAGAGGGTATGAATTACAGCCTCCGGGGGGGCACTCTGGACTCTCAACAGGGGGGGGCTTCCCTAGAGTCAACGGCAGAGCtcaaacacacacgcacggCCGGCCCGGGGGTCCGGCGGCGGCAGTGCACCCCAGCTCCTGTGTGGCAGAATGACTCGGAGCATTGCTCTCtataaatctgtatttaagAGTCAGTGCGCAGCTCTCTCTTGCTCCATGCCGGGGGCCGCGGGGGGCTTTGGCCGAGGActtattttcttgttcttttgtttttgaaacacTGTCAGGCaattttgtggttgttgttgtttggttgcTCTTGaagtaacaaaacaaagggaaagcacataaacaataatacaaaaaaatcttcaaTTAATGCATCGATTTCATCCagttaaaatcatatttaaaaaatgataacaGTGCAAATGTTGCTCACGACCGTTGGACCACAACACGCACTGGGCCGGTGAGCCTggcgggggggggcggggggcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGGGAGGGGCTCGGGAGTCTCAGCTTCTCCTGGTCCGGGAGTGCTGGATCAGCCACTGTAGTGTgatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60389 True 2638 lncRNA 0.47 2 49453984 49456698

Neighbor

gene id symbol gene type direction distance location
AMCG00014004 NA coding upstream 5233 49441384 ~ 49448751 (+)
AMCG00014005 LOC108246070,LOC106532244,LOC100709513 coding upstream 34087 49413955 ~ 49419897 (+)
AMCG00013993 NA coding upstream 497119 48939062 ~ 48956865 (+)
AMCG00013992 gnai1,LOC105897337,LOC108442115,LOC108265813,LOC100706147,LOC107590838,LOC108279833 coding upstream 540916 48908137 ~ 48913068 (+)
AMCG00013995 NA coding upstream 549954 48896802 ~ 48904030 (+)
AMCG00014009 NA coding downstream 95461 49552159 ~ 49556841 (+)
AMCG00014022 NA coding downstream 108266 49564964 ~ 49569099 (+)
AMCG00014015 NA coding downstream 113503 49570201 ~ 49586822 (+)
AMCG00014013 NA coding downstream 131479 49588177 ~ 49594866 (+)
AMCG00014016 NA coding downstream 153659 49610357 ~ 49613183 (+)
G48353 NA non-coding upstream 112 49453033 ~ 49453872 (+)
G48243 NA non-coding upstream 341901 49068105 ~ 49112083 (+)
G48236 NA non-coding upstream 403686 49027168 ~ 49050298 (+)
G48173 NA non-coding upstream 599621 48853986 ~ 48854363 (+)
G48171 NA non-coding upstream 602973 48846064 ~ 48851011 (+)
G48372 NA non-coding downstream 27791 49484489 ~ 49484959 (+)
G48449 NA non-coding downstream 222799 49679497 ~ 49679876 (+)
G48460 NA non-coding downstream 272973 49729671 ~ 49731800 (+)
G48467 NA non-coding downstream 296886 49753584 ~ 49754027 (+)
G48479 NA non-coding downstream 336508 49793206 ~ 49793650 (+)
AMCG00013996 NA other upstream 105383 49345097 ~ 49348601 (+)
G48231 NA other upstream 353526 49076742 ~ 49100458 (+)
G48235 LOC105889183 other upstream 358438 49014629 ~ 49095546 (+)
AMCG00013985 NA other upstream 625009 48821250 ~ 48828975 (+)
G48150 NA other upstream 675525 48776497 ~ 48778459 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other downstream 81356 49538054 ~ 49545335 (+)
AMCG00014021 NA other downstream 157003 49613701 ~ 49620027 (+)
G48451 NA other downstream 232974 49689672 ~ 49692361 (+)
G48453 NA other downstream 241922 49698620 ~ 49699622 (+)
G48454 NA other downstream 244553 49701251 ~ 49701943 (+)

Expression


Co-expression Network