G48398


Basic Information

Item Value
gene id G48398
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49537728 ~ 49595073 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60462
TCGACCGTTCCATAACCAAAGTTTAATTCAGAGAACATTACAAATCTTACAAACAgccaaaacaaaagtttaaaataaaaggacTAGATTGTTACAAAGATTTCTTCATTACTCACAGGACTCTTCAGACACCCTTCCCAAGCTCTCGAAAGGCctttatacacaaacatacagggGGGCGAAAATAAACTTGATTTGCGGCACAAGATGCCAGAGAGGCCTCCCTTGGAACAGACCGGCCGGGACAGAACCAGAACTTGCCAAAACTGCCTGCACAGCCCCCGGCCCATTGAGCCACTACTCCCACCCCTGCAAGGGCAGAATTTGGATGCTTAAATGGACTGAAGCCACAGACCCACCCAGCTCAAACCCAACTGAAGAGCCCCAGccacccgccccccccaccGGCCGAGCGCAGGGCAGCACTCGGGTTCAGAACAACGCACAAACGCTTTGGAAAAGGATCAAGTTTAATTGTGCGACGGTGAGCGTGGCACTGCCGGAGGGACCCGGGCAGGACGGCCCTCTCCTGCACACAGCCACTCGTATATACAGATCTACTATACACCAACTGTTAATCTTGCATTtcacacagatttaaaaaaaaaaaaaaaaaaggggggggagGGAAATAAAGGCATAACCGCTAAAACGtagaatttatatataaaaaaaaaaaaaaaaaaatggaaaagaataGCACATCTCTACAGAGCTCATAGTCCTTAAGGGGATGCTACCAGGGGAAGGGTGGGCTTTCAGGGGTTGAACTTTCTCCACATCTCTCCTCCACTGTAGCATCACTTCACTTCCGTTCATTTGACCTGGAACggctggggagagagagagagagagagagaaatcagacTGACAGGCTGGCCTTTACCTGCTGGAGAGAAGACCAAGTCCTCATTACTCCAATTTCACCGAGATACAGGTCCACAGCCTCAAAGGTAGTTTCAGATCAGAACAAGGACAGCGACTGAAGGGACTGGATAGAGCAGTACCCCAGGGGGCCGGGGCCACGCCTACCTGCGAGATCTGGAGAAGGAACGCGAAGGCTTACGGGTCCTGTCACGGGAGAGGGACCTCTCCCTTCTTCGGTCTCTGGACAGAGATCGCTGCGGCTGCGACTGAAGCTCCTCCTGCGTGGCGATCTGGAAACGAGAAACGCAGCGTCACATTGAGGCCCATGCGCAGCCTGGCCACTGCACCAACCCCACACTGCACACTCGCCCGGGCCCCTCAACACCTGCCCCTAGCACAGCAACGATGGGGCCTCCCTGCTACGGCCCCCTAAACACCGACAAGGCGTGAGCGCGGGGGCAGTGCCACCAAGGCCTCCACTGTGCTGCTCGGGCACCACAACCCCTACATAGGGAGGGTAGGATCAATCAGAGGGACGAGGGCAATTACCGTCTCTTAACCAGGGCACTAGATGGGAACGGGGGGACTATTGCAGGGTCAGGGAATCTGTCCCATGAACTGAGCGCCCACTAGAGCACTGACCCAAAGAGCGTCTAAAAACCCCGCCCTCGCCTCTGCCACTGGGGGGGGTCGCTTATAAAGACCATGCTCTACTCAGGTCTGTCACACCACATCCAGGAGTGAACTACAAACTCCAGCTACTCAACCAGGAAGTCAACAGACAGCACCGCTTCCAGGAGACCAAGACACTGCAGGTTTAACTGCAGCCTCAGACTGAAGCAATTCAAAGCCACACTGCGAGAAGTTAAGAGGCAAATACTCTAGGGAAGCTCATTTTTTCTTCCCCGTGGGGTTTAAATTTGTCCTTCGGTTAAAAAGGTGACCTCTCCAGAACACACCAGGGCACttcaaaccccccccccccccccccccccccccccccccccccccaccccaacccaccCATCCCCAAGATAAACTCATTAAACTACTTGGTCTACATGAGACTAGGCTAACCCTGCAAGACAACGGACAATCttagtcaaattaaaaaagccAACCAttgaattttttaaaataaaaattcaataaaaaacgATAAAAGAAAAGGTCTAAAATGAAGCAGCTTACTCGTTTAAACTGTAACCAGCAGTAAACTGTATTAAGCAGGAAAAACTTACTAGTCTTTTGGTTTTCAACAAGCTAGAAATGGCGAGGGATGCCAGACTGGTGGGCAGGAGAAGGCAGAATTTGCTGAATAGGATTTGCCAGAAGTTGCGAGCTGTTTAGCTGGTTGGCGGATGGGGGCTGCTTGTggatttttcctgcttttatggCTTAGCCGAGGGCCTGTTGCTGTAGGTTGTTGTGTAGACATTTGGAAAAGTAAACAGCTGATTGGTCAGGGATGTGAGGTAGGCCGCTGCTGATTGGGTTTAGGTTGGAGAGGAGGCTGAGAGAACACAGCATGCTCAGGAACCAAAGGGCGGTGCAACCTGACGACCGGCCATGCCTGGGTCATGTGATACGACCCCAGCCAAGCTGAGTGGGGCACGCTGGTCAGTGGTCACATGACGCTGAAAGAGGGCTAGTTGACTGACTCAGAGGGTGGTGAGAAGAGGCATGATGGTGACTCTGCAACGGgggttcatttttattaatatagagatggtaaaaacaaaagtaagcaaccttcaaaaaaataaaaggctatTACAACCAAATCTAGCATCACTttttaactaaaatgtattttaaatcttcTGCAACTCAACTAGAAATAGGACTGGGCTCTCACCGGGACACTAAGCACAACTGGGCCGATGACCCAGCTGATCACCAGACCAGCGTCAAGTCGTCGGACAGCTGGACCAGGTTTGGGGTTTGGGTACATTAATCAGCTTCAAATTTGCAGCGACCGTTACATCCAGCACATCAGTTCAGAGCATCACAGAGCCCAGCCCTATTTACTGCCCTAGACTGCACCCACTTTAAACAGAGTACAGTatccgcccccccccacccgaaCCCAAGCCCTGAACCCCACCTCACCCCTCTAACAAACCTGGCTGCAATGTTAGACTAACAGATGACAATGAAGATGAGACTAGATTAAGACAGTTGGTCATCGCATGCCCCAGCGGTCAGCGCCTCAGAGAGAGGGGCCGACAACTCCCTCAACCCAAAACACTACAGGCTACCCGAGTCAATGTATTCATGGGCTTAGCTTTCGTATGAAGACAAAACAGGAAGCTGGAGGAACTAGGAATCTgaaatggaggggggggggggaataaatcTGTAAATCAGACTCAAAACTTTTCAGTAAAACTGGGTGGAGTTGACACTCTCCTAGCTGAAGTTAGTttcccccactagaggccgAAGCCCCGCTGTCTAAAGGGTTCGTACCTGCGCCGGGGCGGCGGGCTGCGGCGTCTGTAGTCGTCCCGGGGGCGGCGGCTCCAGGATGGCGGGGGCCCTCGGTTGCGGGTGCGCTTCTCCCCGTTGGACAGCTCTACACGCACGCGGCATGCGCACAGATTCCTGTGGGGGCGCGTTTCACTCATTACACCACAAAATAAGCCCAGAGAACTATCGGGAGCAAACAATTACAGAGGGAGAGTTTTGGGCTGACGAAAGAGGCCTCACCTCCCGTCCAGCTCCCTGACGGCGTCAGCGGCATCGCGGGGGTCCTCGAACTCCACAAAGGCGAAGCCGGGTGGGTTGCGGGCGACCCACACGCTGCGCAGGGGCCCGTAGTAGCCGAAGGCGCGCTCCAGCTCAGTCTTGTTGCCATTGTTGCCCAGGTTCCCGACGTAGACCTTGCAGTCGAGCGGACAGTCTCTGTGCATGGCGGGGTCTGCAAGAGATGCCGGGTCAGTG
>TU60464
CCCCAATCACCTACCTGGCCCGTGCACAAAGCCCCGCCCTGCCCGCACTGGTGAGGCTCGTGAGCCCCTTGTCACAGTGAGAGCCACCCCCACCGTCACTGGCCAGCCGTCAGCGGATGAGCCGGAGCGACCCCACCCTGCAGGTCAAATCAAATCACAAGGAGAAGAACTCATATTTGTGATTAGATATCAATCTCTTTAATGTGGAACAGTTTTAAAGCAGAATGGACGCTAGCGTGACAGCTGTACAGATTCACAAGTTTCGCTCATTTGCTGCAGAACTACAATAAATAGATTTACTTCCACCAGTCTTAAACCCCCCCAACACCGCATAGTCTGCTCTGAGGCTGTGACCCTCCCAGGATCAGGTCTGTGCTGACCTGCCCTTCCCTGTCCCCTGGGGTCTGGTCTTGGTTCTACATGGAGCCCAGAGAGTTCTGGTTCTGTACCGGCCGGGACAGAACCAGAACTTGCCAAAACTGCCTGCACAGCCCCCGGCCCATTGAGCCACTACTCCCACCCCTGCAAGGGCAGAATTTGGATGCTTAAATGGACTGAAGCCACAGACCCACCCAGCTCAAACCCAACTGAAGAGCCCCAGccacccgccccccccaccGGCCGAGCGCAGGGCAGCACTCGGGTTCAGAACAACGCACAAACGCTTTGGAAAAGGATCAAGTTTAATTGTGCGACGGTGAGCGTGGCACTGCCGGAGGGACCCGGGCAGGACGGCCCTCTCCTGCACACAGCCACTCGTATATACAGATCTACTATACACCAACTGTTAATCTTGCATTtcacacagatttaaaaaaaaaaaaaaaaaaggggggggagGGAAATAAAGGCATAACCGCTAAAACGtagaatttatatataaaaaaaaaaaaaaaaaaatggaaaagaataGCACATCTCTACAGAGCTCATAGTCCTTAAGGGGATGCTACCAGGGGAAGGGTGGGCTTTCAGGGGTTGAACTTTCTCCACATCTCTCCTCCACTGTAGCATCACTTCACTTCCGTTCATTTGACCTGGAACggctggggagagagagagagagagagagagagacagagagatagagaggggtTGTAGTCGTGGATTAACAGCGACTTAAAACAAAGCTTTTAGTGGCGACCTCGCATGCAGCGGATAAAAGATGGCCGCCACGATCCTACAACAATGCGCcagccgcctcctcctcctcctacacCGGGCCACCGAACTGCCGCTTTAATCGGAGAATAACACCGGCGAGACCCTGCACTGTGCTGGGGAAGACTCCCCGGCCGGCCCGCCGATCGAAGCGCGCTGTGTGGAGTTAGAAAAGCGCCGTTTCTTACCGATGTCGTTGAAGACGTGTGCTCCGCTGCGCGCTGCTCTGCCTCCCGCTCGTCTGCGCTGCTCTACTCACGGGAAGCACGAAATGGCGGCCGGCCGGAAATCCGCTTTTATGCGGTGCATTGCGTCATCGCGCTACGTCCTGCACGTACGCGTGTAGTTTCTTGGTGGTTGTTGCCACGCTTCATTGATTAATTGGGGAAACTGGTCTGGTTGCTTTATAGAGCTGGGCGAGAAATAAATTGACGTTAATTCTAAGATACAGCACAGAGGTTATTAAAGCTCTCTTCCACATGTAATGGTAAACATTGGAGGCCACTTCTGTACTTGCAGTAgccttttctgtactttaaaatcaaactaattACATGGTGTATGATTAGGTTACTTGATTGTTGCCCTGAAGACACAGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60462 True 3813 lncRNA 0.52 2 49541359 49545278
TU60464 False 1763 lncRNA 0.52 3 49537728 49595073

Neighbor

gene id symbol gene type direction distance location
AMCG00014011 NA coding downstream 15108 49505466 ~ 49522620 (-)
AMCG00014006 NA coding downstream 51286 49482042 ~ 49486442 (-)
AMCG00014008 NA coding downstream 67596 49464439 ~ 49470132 (-)
AMCG00014007 arl8a,LOC107671521,LOC107569762,LOC105900530,LOC107750681,LOC107722853 coding downstream 74558 49456627 ~ 49463170 (-)
AMCG00014001 itpr3,LOC106572092,LOC107731245 coding downstream 152077 49354962 ~ 49385651 (-)
AMCG00014023 NA coding upstream 710 49595783 ~ 49607194 (-)
AMCG00014024 NA coding upstream 83247 49678320 ~ 49680362 (-)
AMCG00014034 taf8,LOC106572622,LOC107756368 coding upstream 94606 49689679 ~ 49694164 (-)
AMCG00014035 NA coding upstream 102788 49697861 ~ 49703373 (-)
AMCG00014036 NA coding upstream 155395 49750468 ~ 49757241 (-)
G48370 NA non-coding downstream 83856 49453033 ~ 49453872 (-)
G48363 NA non-coding downstream 183193 49353692 ~ 49354535 (-)
G48275 NA non-coding downstream 487296 49027284 ~ 49050432 (-)
G48175 NA non-coding downstream 886499 48645190 ~ 48651229 (-)
G48106 NA non-coding downstream 991453 48545237 ~ 48546275 (-)
G48430 NA non-coding upstream 18623 49613696 ~ 49613974 (-)
G48433 NA non-coding upstream 23204 49618277 ~ 49618955 (-)
G48437 NA non-coding upstream 27024 49622097 ~ 49623191 (-)
G48439 sars,LOC107697960,LOC107671868,LOC107706967 non-coding upstream 28737 49623810 ~ 49627767 (-)
G48494 NA non-coding upstream 68019 49663092 ~ 49675750 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other downstream 39098 49494727 ~ 49498630 (-)
G48373 NA other downstream 52961 49484500 ~ 49484767 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other downstream 716572 48817983 ~ 48821156 (-)
AMCG00013967 NA other downstream 1058151 48455903 ~ 48479577 (-)
AMCG00013964 NA other downstream 1162632 48366043 ~ 48375096 (-)
G48506 NA other upstream 124692 49719765 ~ 49721526 (-)
AMCG00014033 NA other upstream 126673 49721746 ~ 49724237 (-)
G48510 NA other upstream 133431 49728504 ~ 49729055 (-)
G48516 NA other upstream 149873 49744946 ~ 49747551 (-)
AMCG00014043 tmcc2 other upstream 269249 49864322 ~ 49930152 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032245 NA non-coding NC_007117.7 CM002890.2 41080510 ~ 41082985 (+)
rainbow trout (Oncorhynchus mykiss) sfrs3 sfrs3 misc NC_048571.1 CM023225.2 58707572 ~ 58713630 (-)