G48449


Basic Information

Item Value
gene id G48449
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49679497 ~ 49679876 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60526
TGCCTGTGGCCTTGCCTGTGGCCCCGCTGCGGGGCGGAGACTGACCGCTCGGGGGGGCAGCGGGGCAGGAGGGCCCCTCGGCCATGGGTGCTGGGGAGATGGAGGGCAGCAGGTCCTTCACCGGACTGTCTCTCACCACATAGGTCTCCCGGCGCGGGCAGCGTGGCTCCGCCCCCCCGCCGTTCTCTTTGCGCGCGCCGCGACGCAGTTGCCGGGCCAGACGGTTCGCCTCCAGGGATATCTGCTCCAGCCGCTCTGCGCTCAGGGGGCTCCAGCTCGGCGCCCCGGCCCCCCTGGCCCCCTGCAGAAGCTCCGCCTCTGGGACGTTGAGGTCCAGAGTCTTCGCCACACAGCGCCCGGCGAGCCGCACTGGCCCCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60526 True 380 lncRNA 0.73 1 49679497 49679876

Neighbor

gene id symbol gene type direction distance location
AMCG00014018 celsr2,LOC106565652 coding upstream 5746 49653648 ~ 49673751 (+)
AMCG00014020 NA coding upstream 26335 49647798 ~ 49653162 (+)
AMCG00014025 celsr2 coding upstream 45630 49629809 ~ 49633867 (+)
AMCG00014017 LOC103467055 coding upstream 51732 49620633 ~ 49627765 (+)
AMCG00014016 NA coding upstream 66314 49610357 ~ 49613183 (+)
AMCG00014014 ppil1,LOC107736561,LOC107667353 coding downstream 645 49680521 ~ 49682420 (+)
AMCG00014019 NA coding downstream 6932 49686808 ~ 49688657 (+)
AMCG00014027 NA coding downstream 15390 49695266 ~ 49697020 (+)
AMCG00014026 med20 coding downstream 23835 49703711 ~ 49706258 (+)
AMCG00014029 usp49,LOC106583088 coding downstream 37638 49717514 ~ 49728992 (+)
G48372 NA non-coding upstream 194538 49484489 ~ 49484959 (+)
G48354 NA non-coding upstream 222799 49453984 ~ 49456698 (+)
G48353 NA non-coding upstream 225625 49453033 ~ 49453872 (+)
G48243 NA non-coding upstream 567414 49068105 ~ 49112083 (+)
G48236 NA non-coding upstream 629199 49027168 ~ 49050298 (+)
G48460 NA non-coding downstream 49795 49729671 ~ 49731800 (+)
G48467 NA non-coding downstream 73708 49753584 ~ 49754027 (+)
G48479 NA non-coding downstream 113330 49793206 ~ 49793650 (+)
G48552 NA non-coding downstream 177604 49857480 ~ 49857687 (+)
G48560 tmcc2,LOC106565656 non-coding downstream 191230 49871106 ~ 49873377 (+)
AMCG00014021 NA other upstream 59470 49613701 ~ 49620027 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other upstream 134162 49538054 ~ 49545335 (+)
AMCG00013996 NA other upstream 330896 49345097 ~ 49348601 (+)
G48231 NA other upstream 579039 49076742 ~ 49100458 (+)
G48235 LOC105889183 other upstream 583951 49014629 ~ 49095546 (+)
G48451 NA other downstream 9796 49689672 ~ 49692361 (+)
G48453 NA other downstream 18744 49698620 ~ 49699622 (+)
G48454 NA other downstream 21375 49701251 ~ 49701943 (+)
G48455 NA other downstream 23202 49703078 ~ 49703528 (+)
AMCG00014032 usp49 other downstream 26967 49706843 ~ 49717428 (+)

Expression


Co-expression Network