G48451


Basic Information

Item Value
gene id G48451
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49689672 ~ 49692361 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60533
gcttctttcttttcttatctaatttacaaaaaatatgacaTATTTTCAATCAGGAATAAACAAAAGTCaaccagaaatatatatttatatacatttacacatatttcaagggatggattaaaaaaaaaaaaaaaaaaacatactttcacTTTTGGCCAGAGACACAAACTGCCCGGCGCCTTGGAGCGCAGCGGCCCGTCACAGGTGATGTCACAGGATTCACCCAGCGACTCAGGCAGGAAACCAGTGCAGAGCAGGAGTCGGAGCCAGTCACTGGGAGCGGTGGTCTCCTCCAGGGAGAGGACGGGGCTGTGCGGGGGGAGATCACCGGGCCCCGGTGCCCCTCCCAGGAGACGAGCGGGGAGGAGACCCTGCTGGTCTGAAGACGAGGGGCATCACGGCACGGCCGCACGCCTGGAGACCACAgcatcaTTTCTTCCTGCGCACTTTGGGCTTCTTGACAGGCCGCAGGTATGGGTTGTCGATGAGGTTCTCCTCACTGGCCTTGCCCTGCGGCAGGGTGCCCCCCTGTGGCAGCATGGCGTTCTCCTTGTCGGCACCTGGCTCGTCCTGCGGCGAGAGACACGAGTGAGCGGGAGACAAGAACAGTGCTGGGGAGCATTGTGTGATCGATTGTTCCAGACACAGGGCAGGGCCCGGCCGGGCAGTATCGCTTTTCCCTGTAACACTGAGGTGTGTGGAGAGTGAGGGGCCATGGGGGCGGGGTTCTCACGTTGCCAATGCCCCCAGGCGTGTTCTCGGTGTCGGTCTGGTCGTCCTGCTCCGAGGAGTCCGtctcctccagctgctgcagctccagctctgACGGCAGCAGGGCGCTCAGGTAGGGGATGGAGCTGGGCCTCGCTGCGATCACTGCACACAGAGAAGGGGTTACTGCACTCTACTGCACACAGAGAAGGGGGAGGGAGACCAAGGGTTCTTGCACTGCACAGCaagtgatggagagagagagagagagagagagagagagacacagagggagggagtgggggaaGAGAGAGGTAGCTGCTGTGTGGAAGAGAAGAGAGTGGGGGGCTCTCACGGGGGAAGGCGGTGATGTCATCCTTGAACAGGCTCTGTGTCTCTCCGGTCTTGGCCATGAAGCGTGTCAGAGCGCGCTCCACATCCCGCCGCTGCGTCGCCGCTTTCTCACGCACCACCTGGTACTCCGACACCGGCTCCCGGAACGTCTGCAGGGCACGGCACAGCGCTCACACACACGGCACAGTGCTCACACACACGGCACATCATGCGGCACAGagctcacacacagacacagattgtGGCGTGTGTGAgctctgtgtgtatttctgttttcacaATCTCATTTGTACAACAAACTCAGCACAACAAAGATGGTCTACAATCACCAACACATCCAGACCCTGACTGAAAGTAAGCGTTGAGTTGCAGAGTTTCTACCTCCTCTGTCGTGTTCAGCTTTAACAGTATGATGATCAGCACTGACTGTTTTCAGTTCGAACAACACAcccgttttcttttctttgtctcGTCTCCTCTCCTCATTGGCGAGAGGAGTTCTTGCAAGCGACTAATCCTATATTTTTCTCCCGCTCTCCTTGTTGGGACGGTGTTAGGAATCTCACATTGTGTCTGTTAATGTTGAGCTACATTATGTTGTGATGTACAAATAAggctatattttcaaatgcaaccCATTGACTCAAATACAAATGACTGAAAATGGAGAATCTCAAATACTAGTGTAAACATAATTGATGTTTTTGCAAATTCTTATCAATACTAAATACAGTCAATGAGTGACTGTCAAACAGGAAACAATTTGCaacttttcaaatacaaaattgaaacaGTATTTGATGTCAAATTTGTCATGGTATCTGACCCAGGTCTGACGCACACTgcctcacacactcacacgcatgcacgcacgcacacgctgCCTCACACGCGCACACTGACATGCTGCctcacacgcgcgcacacacacacacgctgccTCACACGCACCCCAGCCTTAACCCACCTTTATGCCCTCGGCAATACTCATGCAAACCAGACCCCAAGTGTCACCTCTTACCCCTCTACCCTGCTGTACACTGGGGCCCCTCTCTTACCCCTCTACACTGTGCAGCAGTAAGTCTGTTGAGAGTCACTCTGGGAAGGAAGGCATCGGCTtcacaaacatgagtgaagctcgtcacatgcagacagtttccattttttttttctctctctctctccctctcccttcctaAAACAAGAGCTTCTCctcctctcgctctccctctctgctctcCCTCTTGGGCCCCTCCCCCAGTGTCTCACCGGTGTCTTGATGTAGGTGTGGGGGTCGGGGAAGTCGGGGAAGTGGCTGGGGATGTGATGGGGGTGCGTGCGCTTCTGCCCAGCCGTCAGCGCCCTGGGCACCACAGGGGGGTTGGTCACCGGCGCTGCGGAGACAGAGTCACAGCATCAGGACCCCTGGGATGAGCCAGCCCGGCCCCCTGACAGCAGACTTTGCATCAAACTACTAAATAGGTACAGCTTTGGACCGGCCGGCGGCCCAGGACAGAGTCAATAAACAATATGTACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60533 True 2602 TUCP 0.54 2 49689672 49692361

Neighbor

gene id symbol gene type direction distance location
AMCG00014019 NA coding upstream 1015 49686808 ~ 49688657 (+)
AMCG00014014 ppil1,LOC107736561,LOC107667353 coding upstream 7252 49680521 ~ 49682420 (+)
AMCG00014018 celsr2,LOC106565652 coding upstream 15921 49653648 ~ 49673751 (+)
AMCG00014020 NA coding upstream 36510 49647798 ~ 49653162 (+)
AMCG00014025 celsr2 coding upstream 55805 49629809 ~ 49633867 (+)
AMCG00014027 NA coding downstream 2905 49695266 ~ 49697020 (+)
AMCG00014026 med20 coding downstream 11350 49703711 ~ 49706258 (+)
AMCG00014029 usp49,LOC106583088 coding downstream 25153 49717514 ~ 49728992 (+)
AMCG00014030 NA coding downstream 44053 49736414 ~ 49738159 (+)
AMCG00014037 NA coding downstream 78232 49770593 ~ 49771894 (+)
G48449 NA non-coding upstream 9796 49679497 ~ 49679876 (+)
G48372 NA non-coding upstream 204713 49484489 ~ 49484959 (+)
G48354 NA non-coding upstream 232974 49453984 ~ 49456698 (+)
G48353 NA non-coding upstream 235800 49453033 ~ 49453872 (+)
G48243 NA non-coding upstream 577589 49068105 ~ 49112083 (+)
G48460 NA non-coding downstream 37310 49729671 ~ 49731800 (+)
G48467 NA non-coding downstream 61223 49753584 ~ 49754027 (+)
G48479 NA non-coding downstream 100845 49793206 ~ 49793650 (+)
G48552 NA non-coding downstream 165119 49857480 ~ 49857687 (+)
G48560 tmcc2,LOC106565656 non-coding downstream 178745 49871106 ~ 49873377 (+)
AMCG00014021 NA other upstream 69645 49613701 ~ 49620027 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other upstream 144337 49538054 ~ 49545335 (+)
AMCG00013996 NA other upstream 341071 49345097 ~ 49348601 (+)
G48231 NA other upstream 589214 49076742 ~ 49100458 (+)
G48235 LOC105889183 other upstream 594126 49014629 ~ 49095546 (+)
G48453 NA other downstream 6259 49698620 ~ 49699622 (+)
G48454 NA other downstream 8890 49701251 ~ 49701943 (+)
G48455 NA other downstream 10717 49703078 ~ 49703528 (+)
AMCG00014032 usp49 other downstream 14482 49706843 ~ 49717428 (+)
G48457 NA other downstream 30665 49723026 ~ 49723876 (+)

Expression


Co-expression Network