G48453


Basic Information

Item Value
gene id G48453
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49698620 ~ 49699622 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60535
CCAGCCTGTCCCTGTTGACACTTAGTGATGCCCATCAACCTTGTCGAGTTGAGTTGAGAGGGAGGAAGCGGGTGGGGtttgccagtgtgtgtgtgtgtgtgtatgtgagagagagaatgtgtgtacatgtgtccgtgtgtgagtgtgaaagtGTTGTGTGTCGCCGGCGTGCTGACCTTTGAACCAGGCCCCGGGCTTGAACAGGGCCTTCTTCAGCGCGCTGTACAGGTGGAAGTTGAGGCGCTTGTACTCTGCGATGTCGTCTCGCACCCGCGGCAGCAGCACCAGGTTGTAGAAGCGCTGGGCCATGCGCTCCTTCAGGTTAGAGGAGAAGATCCTGCGGGACAGCAGGGGGCGACAGTGAGCCAAGAGCGttatacacacgcacacgtcACACACATATTAggggtgtacatttttttattgaaatcgCAGATCGATTGAAACGAGCGCTTGATTTCGACCATCGGATTTAAAGACGGGATCGCGATGTATAcgtcagcaaaaacaaaacgacagcaGATTCCTCAACACTAGAGCCACACAGCGGCTGTGCACCTGATAGAGCTCTCTGGATCAATACTCGCTGCAGCCACTGTGTGCTCGTGTGCAGTCTTTGTTTCAGGGCTGGCTGGCGACAGGCACCAGTGAAGATGCTGCCAGGCTGCTCGGGCAGCCCTGTTGAAGTCTGcttagatatgtgcataccgatttaaACACCAGTTCACACAGCTGATGGTGtgaagtatattttattatttgtttttccattgatGTATATGCgctcattttgaaaaaataagaaacacttCAACATGCAATGCAGAGGTAGCGTTTCTGCCCTGAACATGTTTTGTGATGTTCATatgcaaatctagaactacttACAGTCCATTAAAGTGCGTTTCATAAGCCCCGACTGCGAAGGCACTGTTAATACACGGTCAGTGTTGATTCCTGGCTGGCAGCGTTAAAATCAAAAAAGGTTTTTCATTTGGAGATC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60535 True 1003 TUCP 0.49 1 49698620 49699622

Neighbor

gene id symbol gene type direction distance location
AMCG00014027 NA coding upstream 1600 49695266 ~ 49697020 (+)
AMCG00014019 NA coding upstream 9963 49686808 ~ 49688657 (+)
AMCG00014014 ppil1,LOC107736561,LOC107667353 coding upstream 16200 49680521 ~ 49682420 (+)
AMCG00014018 celsr2,LOC106565652 coding upstream 24869 49653648 ~ 49673751 (+)
AMCG00014020 NA coding upstream 45458 49647798 ~ 49653162 (+)
AMCG00014026 med20 coding downstream 4089 49703711 ~ 49706258 (+)
AMCG00014029 usp49,LOC106583088 coding downstream 17892 49717514 ~ 49728992 (+)
AMCG00014030 NA coding downstream 36792 49736414 ~ 49738159 (+)
AMCG00014037 NA coding downstream 70971 49770593 ~ 49771894 (+)
AMCG00014031 NA coding downstream 72539 49772161 ~ 49772784 (+)
G48449 NA non-coding upstream 18744 49679497 ~ 49679876 (+)
G48372 NA non-coding upstream 213661 49484489 ~ 49484959 (+)
G48354 NA non-coding upstream 241922 49453984 ~ 49456698 (+)
G48353 NA non-coding upstream 244748 49453033 ~ 49453872 (+)
G48243 NA non-coding upstream 586537 49068105 ~ 49112083 (+)
G48460 NA non-coding downstream 30049 49729671 ~ 49731800 (+)
G48467 NA non-coding downstream 53962 49753584 ~ 49754027 (+)
G48479 NA non-coding downstream 93584 49793206 ~ 49793650 (+)
G48552 NA non-coding downstream 157858 49857480 ~ 49857687 (+)
G48560 tmcc2,LOC106565656 non-coding downstream 171484 49871106 ~ 49873377 (+)
G48451 NA other upstream 6259 49689672 ~ 49692361 (+)
AMCG00014021 NA other upstream 78593 49613701 ~ 49620027 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other upstream 153285 49538054 ~ 49545335 (+)
AMCG00013996 NA other upstream 350019 49345097 ~ 49348601 (+)
G48231 NA other upstream 598162 49076742 ~ 49100458 (+)
G48454 NA other downstream 1629 49701251 ~ 49701943 (+)
G48455 NA other downstream 3456 49703078 ~ 49703528 (+)
AMCG00014032 usp49 other downstream 7221 49706843 ~ 49717428 (+)
G48457 NA other downstream 23404 49723026 ~ 49723876 (+)
AMCG00014028 NA other downstream 39690 49739312 ~ 49749169 (+)

Expression


Co-expression Network