G48460


Basic Information

Item Value
gene id G48460
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49729671 ~ 49731800 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60545
GACTGTCCCTGGGGGGCGCTGTGGGGCCTCGGCCGGCTCTGCGCGTCGGCCCTCTTGCCGCTCGCTCTTCCTGGCCGGAGCTCCTGCCAACGTCACGGCATCGCTGCGCAGGAGAACCAGGAAGCGGCCGGGCAGTCTGAGCGGGACCGGAGACACGGACGCAGGAAAGACCGGGAGACGAGGCCGCTGTGCCGAGGGAGAGACTGCATCGCCGAGGCGCGGCTCCACTGCTGCCGAATTCCTTTCACGGAGGAAACGGGCCTGGGAACCTCGACAGCGCTGCAGGTGAGGGATCAGCGGGACGGACGGATCCGCAGGgagtctctctccccctctgtctgtctgtctgtctgtctctctctcactccgtGGGACCGGAGGCTCGTTACTCTCCTGATTTCTACTGATTTCTGTTACTTGTCGTAGAGGCGAGCGGGGGGGGGTTCGTCACAACACGGAATAGAAGCCCTGAGATCATCCGACTGAGCAGCGTGTGACCCGACTActgcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60545 True 510 lncRNA 0.65 2 49729671 49731800

Neighbor

gene id symbol gene type direction distance location
AMCG00014029 usp49,LOC106583088 coding upstream 679 49717514 ~ 49728992 (+)
AMCG00014026 med20 coding upstream 23413 49703711 ~ 49706258 (+)
AMCG00014027 NA coding upstream 32651 49695266 ~ 49697020 (+)
AMCG00014019 NA coding upstream 41014 49686808 ~ 49688657 (+)
AMCG00014014 ppil1,LOC107736561,LOC107667353 coding upstream 47251 49680521 ~ 49682420 (+)
AMCG00014030 NA coding downstream 4614 49736414 ~ 49738159 (+)
AMCG00014037 NA coding downstream 38793 49770593 ~ 49771894 (+)
AMCG00014031 NA coding downstream 40361 49772161 ~ 49772784 (+)
AMCG00014040 NA coding downstream 105625 49837425 ~ 49842315 (+)
AMCG00014050 NA coding downstream 178758 49910558 ~ 49916242 (+)
G48449 NA non-coding upstream 49795 49679497 ~ 49679876 (+)
G48372 NA non-coding upstream 244712 49484489 ~ 49484959 (+)
G48354 NA non-coding upstream 272973 49453984 ~ 49456698 (+)
G48353 NA non-coding upstream 275799 49453033 ~ 49453872 (+)
G48243 NA non-coding upstream 617588 49068105 ~ 49112083 (+)
G48467 NA non-coding downstream 21784 49753584 ~ 49754027 (+)
G48479 NA non-coding downstream 61406 49793206 ~ 49793650 (+)
G48552 NA non-coding downstream 125680 49857480 ~ 49857687 (+)
G48560 tmcc2,LOC106565656 non-coding downstream 139306 49871106 ~ 49873377 (+)
G48457 NA other upstream 5795 49723026 ~ 49723876 (+)
AMCG00014032 usp49 other upstream 12243 49706843 ~ 49717428 (+)
G48455 NA other upstream 26143 49703078 ~ 49703528 (+)
G48454 NA other upstream 27728 49701251 ~ 49701943 (+)
G48453 NA other upstream 30049 49698620 ~ 49699622 (+)
AMCG00014028 NA other downstream 7512 49739312 ~ 49749169 (+)
G48464 NA other downstream 10052 49741852 ~ 49742514 (+)
AMCG00014038 NA other downstream 76348 49808148 ~ 49813985 (+)
G48566 NA other downstream 182129 49913929 ~ 49914542 (+)
G48578 NA other downstream 205015 49936815 ~ 49948082 (+)

Expression


Co-expression Network