G48479


Basic Information

Item Value
gene id G48479
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49793206 ~ 49793650 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60571
GTAAACACTGAAGAGGGGCAGGTCTAGGAGGCCCTGTGCCATCATGCTGTCAAACACAGGCGTGGCGCCCGCTGCTGCAATGGACGGGTATCCAAGACCCAGGATCCCATCAAAGTCAGCATCCACAAAGGTGCTGCCCGGCTCGCTCACACTCTCGCCGAACTTCTGATGGGACACAGCCATCCCTTCCACATCACCAGGTCATATGCCAGAATGCCAGTCAGGCTTCCAGTGCCATACTGTATGTGGAAAGGACGGCCATCCAGCTCATAGGTTGTAGACTGAGAGGAATGGTATCTATTGTGGATTTCTGTGAAGAAGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60571 True 324 lncRNA 0.54 2 49793206 49793650

Neighbor

gene id symbol gene type direction distance location
AMCG00014031 NA coding upstream 20422 49772161 ~ 49772784 (+)
AMCG00014037 NA coding upstream 21312 49770593 ~ 49771894 (+)
AMCG00014030 NA coding upstream 55047 49736414 ~ 49738159 (+)
AMCG00014029 usp49,LOC106583088 coding upstream 64214 49717514 ~ 49728992 (+)
AMCG00014026 med20 coding upstream 86948 49703711 ~ 49706258 (+)
AMCG00014040 NA coding downstream 43775 49837425 ~ 49842315 (+)
AMCG00014050 NA coding downstream 116908 49910558 ~ 49916242 (+)
AMCG00014039 NA coding downstream 124977 49918627 ~ 49925703 (+)
AMCG00014049 NA coding downstream 133576 49927226 ~ 49929020 (+)
G48467 NA non-coding upstream 39179 49753584 ~ 49754027 (+)
G48460 NA non-coding upstream 61406 49729671 ~ 49731800 (+)
G48449 NA non-coding upstream 113330 49679497 ~ 49679876 (+)
G48372 NA non-coding upstream 308247 49484489 ~ 49484959 (+)
G48354 NA non-coding upstream 336508 49453984 ~ 49456698 (+)
G48552 NA non-coding downstream 63830 49857480 ~ 49857687 (+)
G48560 tmcc2,LOC106565656 non-coding downstream 77456 49871106 ~ 49873377 (+)
AMCG00014028 NA other upstream 44037 49739312 ~ 49749169 (+)
G48464 NA other upstream 50692 49741852 ~ 49742514 (+)
G48457 NA other upstream 69330 49723026 ~ 49723876 (+)
AMCG00014032 usp49 other upstream 75778 49706843 ~ 49717428 (+)
G48455 NA other upstream 89678 49703078 ~ 49703528 (+)
AMCG00014038 NA other downstream 14498 49808148 ~ 49813985 (+)
G48566 NA other downstream 120279 49913929 ~ 49914542 (+)
G48578 NA other downstream 143165 49936815 ~ 49948082 (+)
G48583 NA other downstream 162542 49956192 ~ 49956729 (+)

Expression


Co-expression Network