G48560 (tmcc2,LOC106565656)


Basic Information

Item Value
gene id G48560
gene name tmcc2,LOC106565656
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49871106 ~ 49873377 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60672
CGGTGGAGTCCTGCCTGACGCGCATCACGAAGCTGGagttgcagcagcagcagcagcaggttgTGCAGCTGGAGGGGGTGGAGAACGCCAATGCACGGGCACTGCTGGGCAAGTTCATCAACGTGATCCTGGCACTGATGGCAGTGCTGCTGGTGTTCGTGTCCACGCTGGCCAACTTCATCACGCCGCTGATGAAGACGCGGGCGCGCGTGGCCGCCACCATGCTGCTGGCACTGCTGCTGTTCGCGCTGTGGAAGCACTGGGACCTGCTGGAGTTGTGGCTGCTGCCCAGCTGATCGGCTTGGGGCCGGCGGGCGACCGAtcgattaattgatttattggtgtttttttccatgacaCCGTATCGCGACAccaccccctcctccactctgcATTCTTTTCTATCCCAGAGGGGACAGTTTATACCGATagaaacatttgatttattttgattttttccaccatcagatgtttttgttctcggttttgttcctttatttatttatttttcaaaggtgtgtgaaagtgtgtagTTCCCCTGGAGGCAGCGTGGGGGGGCAGGTGTTGGCCCGGCCCCCCAAGGCTACACAGACTCCCAGCTCTGTGAACAGCCCTGCGGACCCCCACACTGTCCGCTGCCCTCCGCACTGGCTGTTATCTGGACGCAGGGGATGCTGGATGTTTCATGGCCGTGAACAGGGGAGCGAAGTGGGGCAGCAGGGCGCAGCAATGATGGAGacgggaggaagagagagagagagagagtgagtgtgatagagtgtgagagagtgaaaaagagagagagacagagagtgagtgtgatagaatgtgagagagagtgtcagcGTGGAGTCCAGCCCGCAGGGAACAGGAAGAGAACAGACTTGTGTCCAGGGGAGGAACAGGGTCGTGGCCAGACTGACAGTGGACGGGGAGACGGACCGGGGCAGGAGCGGCTGACTGGACTGAGCCACTGCGGCGGCACCAGCGCTGCCCGCTCTCCTGCCACTCTCCCTGACGGGTCACGGTGTGACTGTAGTTGGCGATTTGTTTTGACCGCTGTGTTCTGCTGTGTTACTTTGTCGAGGAGTATGCGACAGAGCTGCTGCACTGCCCCGCGTTTCCACAGACGTTtgaattttatatataaaagaagaaaacaaaagattaaaaaaaataaaactaaaggtGTGTTAGCGGTGACCCGCACCCCGGGTCAGTGTCCGGAGACCTGGTGAGCTGCATCCAGTGTCCGGGCCGCGTAGGCCGCTCAGCTCTGTGCTGTCCGCTCCGTGCTCCTTACTGCAGACAGAAggatttgtatgtttgtttttgcctttatttccatttctttaCGAAGCTCCGTCTGTGATGCTGTCGTCGTTCTTTTCCTGCCCGGAGAGTCAGATcttcacatgtatttatttattgattgattgattgattgtttgattggtttgtttatttatttacctctCCGCTCGCTCTGGCGCTACTCTCTCTGGTCAGTCTGCACGTCACCAGGGGCGGCTGCTGAGGCCCTGAGTGTCCGTGTTGCGCTCTGAGGACAGTGACTTTTACCTCGGTCCGTCTCTCTGGACTCTAGGGCTGCGCTGGGGCTGCAGGGAGCCTAGGGAGATGCTTACTGgggtttttaaattgttttcattttttaaattatttattaaattgtacGGCGAGTGTGCGGGCCGGGGCGGGGGGATGGTCACTGTTCTTTCGcacttgttatttattgttataaagTCTGTGCAGGGAGTGTGACCTGTGTGCGCCGGCCCAGAGCCCAGGACAGGATCCTTCCACAGTGAgcgacacacacagcaccttcTCCTGGTCAGAACACCTGCACCACTGCCCACCCCCGCCAGTgttcatgataataataatgtgtgtgtctttgtgcgtgtgtgtttgtttgtctgtctgtgtgtaagtgtgtctgtgtgtgtgtgtaagcgaGTGAGTGTGTCAAGtgtgtctttttgtgtgtttgtgtttgtgtgtgagcgagTCTGTGTGTaagtatgtctgtgtgtgtaagcaagTGTCTGTCTGGGTGAGTGTAAGCGAGTGTGTCTGTGTGNN

Function

symbol description
tmcc2 Predicted to be involved in amyloid precursor protein metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC2 (transmembrane and coiled-coil domain family 2).

NR:

description
PREDICTED: transmembrane and coiled-coil domains protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60672 True 2106 lncRNA 0.53 2 49871106 49873377

Neighbor

gene id symbol gene type direction distance location
AMCG00014040 NA coding upstream 28791 49837425 ~ 49842315 (+)
AMCG00014031 NA coding upstream 98322 49772161 ~ 49772784 (+)
AMCG00014037 NA coding upstream 99212 49770593 ~ 49771894 (+)
AMCG00014030 NA coding upstream 132947 49736414 ~ 49738159 (+)
AMCG00014029 usp49,LOC106583088 coding upstream 142114 49717514 ~ 49728992 (+)
AMCG00014050 NA coding downstream 37181 49910558 ~ 49916242 (+)
AMCG00014039 NA coding downstream 45250 49918627 ~ 49925703 (+)
AMCG00014049 NA coding downstream 53849 49927226 ~ 49929020 (+)
G48552 NA non-coding upstream 13419 49857480 ~ 49857687 (+)
G48479 NA non-coding upstream 77456 49793206 ~ 49793650 (+)
G48467 NA non-coding upstream 117079 49753584 ~ 49754027 (+)
G48460 NA non-coding upstream 139306 49729671 ~ 49731800 (+)
G48449 NA non-coding upstream 191230 49679497 ~ 49679876 (+)
AMCG00014038 NA other upstream 57121 49808148 ~ 49813985 (+)
AMCG00014028 NA other upstream 121937 49739312 ~ 49749169 (+)
G48464 NA other upstream 128592 49741852 ~ 49742514 (+)
G48457 NA other upstream 147230 49723026 ~ 49723876 (+)
AMCG00014032 usp49 other upstream 153678 49706843 ~ 49717428 (+)
G48566 NA other downstream 40552 49913929 ~ 49914542 (+)
G48578 NA other downstream 63438 49936815 ~ 49948082 (+)
G48583 NA other downstream 82815 49956192 ~ 49956729 (+)

Expression


Co-expression Network