G48570 (tmcc2,LOC106583086,LOC106565656)


Basic Information

Item Value
gene id G48570
gene name tmcc2,LOC106583086,LOC106565656
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49870993 ~ 49918397 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU60685
CACACAGACACACTCGCTTACACTCACCCAGACAGACActtgcttacacacacagacatacttACACACAGActcgctcacacacaaacacaaacacacaaaaagacacaCTTGACACACTCACtcgcttacacacacacacagacacacttacacacagacagacaaacaaacacacacgcacaaagacacacacattattattatcatgaacACTGGCGGGGGTGGGCAGTGGTGCAGGTGTTCTGACCAGGAgaaggtgctgtgtgtgtcgcTCACTGTGGAAGGATCCTGTCCTGGGCTCTGGGCCGGCGCACACAGGTCACACTCCCTGCACAGActttataacaataaataacaagtgCGAAAGAACAGTGACCATCCCCCCGCCCCGGCCCGCACACTCGCCgtacaatttaataaataatttaaaaaatgaaaacaatttaaaaacccCAGTAAGCATCTCCCTAGGCTCCCTGCAGCCCCAGCGCAGCCCTAGAGTCCAGAGAGACGGACCGAGGTAAAAGTCACTGTCCTCAGAGCGCAACACGGACACTCAGGGCCTCAGCAGCCGCCCCTGGTGACGTGCAGACTGACCAGAGAGAGTAGCGCCAGAGCGAGCGGagaggtaaataaataaacaaaccaatcaaacaatcaatcaatcaatcaataaataaatacatgtgaagATCTGACTCTCCGGGCAGGAAAAGAACGACGACAGCATCACAGACGGAGCTTCGtaaagaaatggaaataaaggcaaaaacaaacatacaaatccTTCTGTCTGCAGTAAGGAGCACGGAGCGGACAGCACAGAGCTGAGCGGCCTACGCGGCCCGGACACTGGATGCAGCTCACCAGGTCTCCGGACACTGACCCGGGGTGCGGGTCACCGCTAACACacctttagttttattttttttaatcttttgttttcttcttttatatataaaattcaAACGTCTGTGGAAACGCGGGGCAGTGCAGCAGCTCTGTCGCATACTCCTCGACAAAGTAACACAGCAGAACACAGCGGTCAAAACAAATCGCCAACTACAGTCACACCGTGACCCGTCAGGGAGAGTGGCAGGAGAGCGGGCAGCGCTGGTGCCGCCGCAGTGGCTCAGTCCAGTCAGCCGCTCCTGCCCCGGTCCGTCTCCCCGTCCACTGTCAGTCTGGCCACGACCCTGTTCCTCCCCTGGACACAAGTCTGTTCTCTTCCTGTTCCCTGCGGGCTGGACTCCACgctgacactctctctcacattctatcacactcactctctgtctctctctctttttcactctctcacactctatcacactcactctctctctctctctcttcctcccgtCTCCATCATTGCTGCGCCCTGCTGCCCCACTTCGCTCCCCTGTTCACGGCCATGAAACATCCAGCATCCCCTGCGTCCAGATAACAGCCAGTGCGGAGGGCAGCGGACAGTGTGGGGGTCCGCAGGGCTGTTCACAGAGCTGGGAGTCTGTGTAGCCTTGGGGGGCCGGGCCAACACCTGCCCCCCCACGCTGCCTCCAGGGGAActacacactttcacacacctttgaaaaataaataaataaaggaacaaaaccgagaacaaaaacatctgatggtggaaaaaatcaaaataaatcaaatgtttctATCGGTATAAACTGTCCCCTCTGGGATAGAAAAGAATgcagagtggaggagggggtggTGTCGCGATACGGtgtcatggaaaaaaacaccaataaatcaattaatcgaTCGGTCGCCCGCCGGCCCCAAGCCGATCAGCTGGGCAGCAGCCACAACTCCAGCAGGTCCCAGTGCTTCCACAGCGCGAACAGCAGCAGTGCCAGCAGCATGGTGGCGGCCACGCGCGCCCGCGTCTTCATCAGCGGCGTGATGAAGTTGGCCAGCGTGGACACGAACACCAGCAGCACTGCCATCAGTGCCAGGATCACGTTGATGAACTTGCCCAGCAGTGCCCGTGCATTGGCGTTCTCCACCCCCTCCAGCTGCAcaacctgctgctgctgctgctgcaactCCAGCTTCGTGATGCGCGTCAGGCAGGACTCCACCGCCTCCTGCAGGGAaacgcacacgcatgcacacatacacacacacacacagagacacacgcacgcacgcacacacacacacacagacagagacacacacacaaagacacagaca
>TU60686
cacaaacacacacacACACACTCGCTTACACTCACCCAGACAGACActtgcttacacacacagacatacttACACACAGActcgctcacacacaaacacaaacacacaaaaagacacaCTTGACACACTCACtcgcttacacacacacacagacacacttacacacagacagacaaacaaacacacacgcacaaagacacacacattattattatcatgaacACTGGCGGGGGTGGGCAGTGGTGCAGGTGTTCTGACCAGGAgaaggtgctgtgtgtgtcgcTCACTGTGGAAGGATCCTGTCCTGGGCTCTGGGCCGGCGCACACAGGTCACACTCCCTGCACAGActttataacaataaataacaagtgCGAAAGAACAGTGACCATCCCCCCGCCCCGGCCCGCACACTCGCCgtacaatttaataaataatttaaaaaatgaaaacaatttaaaaacccCAGTAAGCATCTCCCTAGGCTCCCTGCAGCCCCAGCGCAGCCCTAGAGTCCAGAGAGACGGACCGAGGTAAAAGTCACTGTCCTCAGAGCGCAACACGGACACTCAGGGCCTCAGCAGCCGCCCCTGGTGACGTGCAGACTGACCAGAGAGAGTAGCGCCAGAGCGAGCGGagaggtaaataaataaacaaaccaatcaaacaatcaatcaatcaatcaataaataaatacatgtgaagATCTGACTCTCCGGGCAGGAAAAGAACGACGACAGCATCACAGACGGAGCTTCGtaaagaaatggaaataaaggcaaaaacaaacatacaaatccTTCTGTCTGCAGTAAGGAGCACGGAGCGGACAGCACAGAGCTGAGCGGCCTACGCGGCCCGGACACTGGATGCAGCTCACCAGGTCTCCGGACACTGACCCGGGGTGCGGGTCACCGCTAACACacctttagttttattttttttaatcttttgttttcttcttttatatataaaattcaAACGTCTGTGGAAACGCGGGGCAGTGCAGCAGCTCTGTCGCATACTCCTCGACAAAGTAACACAGCAGAACACAGCGGTCAAAACAAATCGCCAACTACAGTCACACCGTGACCCGTCAGGGAGAGTGGCAGGAGAGCGGGCAGCGCTGGTGCCGCCGCAGTGGCTCAGTCCAGTCAGCCGCTCCTGCCCCGGTCCGTCTCCCCGTCCACTGTCAGTCTGGCCACGACCCTGTTCCTCCCCTGGACACAAGTCTGTTCTCTTCCTGTTCCCTGCGGGCTGGACTCCACgctgacactctctctcacattctatcacactcactctctgtctctctctctttttcactctctcacactctatcacactcactctctctctctctctcttcctcccgtCTCCATCATTGCTGCGCCCTGCTGCCCCACTTCGCTCCCCTGTTCACGGCCATGAAACATCCAGCATCCCCTGCGTCCAGATAACAGCCAGTGCGGAGGGCAGCGGACAGTGTGGGGGTCCGCAGGGCTGTTCACAGAGCTGGGAGTCTGTGTAGCCTTGGGGGGCCGGGCCAACACCTGCCCCCCCACGCTGCCTCCAGGGGAActacacactttcacacacctttgaaaaataaataaataaaggaacaaaaccgagaacaaaaacatctgatggtggaaaaaatcaaaataaatcaaatgtttctATCGGTATAAACTGTCCCCTCTGGGATAGAAAAGAATgcagagtggaggagggggtggTGTCGCGATACGGtgtcatggaaaaaaacaccaataaatcaattaatcgaTCGGTCGCCCGCCGGCCCCAAGCCGATCAGCTGGGCAGCAGCCACAACTCCAGCAGGTCCCAGTGCTTCCACAGCGCGAACAGCAGCAGTGCCAGCAGCATGGTGGCGGCCACGCGCGCCCGCGTCTTCATCAGCGGCGTGATGAAGTTGGCCAGCGTGGACACGAACACCAGCAGCACTGCCATCAGTGCCAGGATCACGTTGATGAACTTGCCCAGCAGTGCCCGTGCATTGGCGTTCTCCACCCCCTCCAGCTGCAcaacctgctgctgctgctgctgcaactCCAGCTTCGTGATGCGCGTCAGGCAGGACTCCACCGCCTCCTGCAGGGAaacgcacacgcatgcacacatacacacacacacacagagacacacgcacgcacgcacacacacacacacagacagagacacacacacaaagacacagaca

Function

symbol description
tmcc2 Predicted to be involved in amyloid precursor protein metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC2 (transmembrane and coiled-coil domain family 2).

NR:

description
PREDICTED: transmembrane and coiled-coil domains protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60685 False 2217 TUCP 0.53 2 49870993 49873375
TU60686 True 2225 TUCP 0.53 3 49870993 49918397

Neighbor

gene id symbol gene type direction distance location
AMCG00014042 dstyk coding downstream 39622 49820480 ~ 49831371 (-)
AMCG00014045 NA coding downstream 52717 49814049 ~ 49818276 (-)
AMCG00014047 NA coding downstream 66392 49796846 ~ 49804601 (-)
AMCG00014048 NA coding downstream 76227 49791343 ~ 49794766 (-)
AMCG00014046 NA coding downstream 82247 49783272 ~ 49788746 (-)
AMCG00014044 NA coding upstream 12763 49931160 ~ 49934490 (-)
G48517 NA non-coding downstream 121711 49748589 ~ 49749282 (-)
G48512 NA non-coding downstream 136821 49733909 ~ 49734172 (-)
G48509 NA non-coding downstream 143986 49726288 ~ 49727007 (-)
G48508 NA non-coding downstream 144744 49725735 ~ 49726249 (-)
G48494 NA non-coding downstream 195243 49663092 ~ 49675750 (-)
G48516 NA other downstream 123442 49744946 ~ 49747551 (-)
G48510 NA other downstream 141938 49728504 ~ 49729055 (-)
AMCG00014033 NA other downstream 146756 49721746 ~ 49724237 (-)
G48506 NA other downstream 149467 49719765 ~ 49721526 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other downstream 372363 49494727 ~ 49498630 (-)

Expression


Co-expression Network