AMCG00014076 (ncam2,LOC108426076)


Basic Information

Item Value
gene id AMCG00014076
gene name ncam2,LOC108426076
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 567929 ~ 577078 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014076
ATGGGTGGGATAAAACCACAGCCACATAAACAGGCCACGACACACTGGGTCATGGCTGCTGGAGACGCGGAGATGACCATCGGGGAGCCGGTCAGCATGGACTGGTTCAGCCCGCAGGGGGAGCGCATGGTGTCGTCTCAGCGTGTCGTCCTGCACAACGAGGGCGTCCGCTCCCGCCTCACCATCTACAACGCCAACATCGAGGACGCCGGCATCTACCGCTGCCAGGTCACCGACGGCCAGGGCCAGACACAGGAGGCCACGGTGGTGCTGGAGATCTACCAGAAGCTGACGTTCCGTGAGGTGCAGTCTCCGCAGGAGTTCCGGCAGGGCGAGGTGGCGGAGGTGGTGTGTGATGTCATCAGCTCTCCGGTGCCGGTGGTCACCTGGCTGTACAACAACCGGGAGATCACAACTGAGGAGTTCAGTGagtgcagggggaggggaggattAATCTCCCAGCTCAATAGACAGATGTACTGCTTTTATTTCCTCAAAATGTCTAATCACAGAGCAATCGGTAAAGTCTCGCTGGCCAGACTCGAGCAGATCTGTGTTTCTACACCCAGTGCAAGTCCAGAGACAGGTGCCCTGGGCAGCACCTCCGTCTCTCAGCAGCTTTGCCTGCAGGAGACCCACTGCCGGGACCACTACCATGTCCTTCCCAACAACAACCTGCAGATCCAGAACGTGGCGAAGAGGGATGAGGGTGTGTACCGCTGCGAGGCCCGGCAAACCAGCTCCCCTACCagttcctcctctctctccgtctcacCGCCTCGTGATCCCACATCAGCACTGGCAGCACGGCGTGCCGAGACCCGCACCCAGAATATCAACGCCTGCCTGCCGATGACGAAACAGACTCTGAACGCAGGCTGGCTGATATCTGCCCTCCTGCTC

Function

symbol description
ncam2 Acts upstream of or within response to hypoxia. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Is expressed in brain; sensory system; and swim bladder. Orthologous to human NCAM2 (neural cell adhesion molecule 2).

NR:

description
ncam2, partial

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014076 True 903 mRNA 0.60 6 567929 577078

Neighbor

gene id symbol gene type direction distance location
AMCG00014072 NA coding downstream 5297 544467 ~ 562632 (-)
AMCG00014075 NA coding downstream 28469 534178 ~ 539460 (-)
AMCG00014073 NA coding downstream 38467 529163 ~ 529462 (-)
AMCG00014074 NA coding downstream 40563 515141 ~ 527366 (-)
AMCG00014070 NA coding downstream 238512 289769 ~ 329417 (-)
AMCG00014081 NA coding upstream 633666 1210744 ~ 1212770 (-)
AMCG00014080 NA coding upstream 654546 1231624 ~ 1232601 (-)
AMCG00014082 NA coding upstream 690164 1267242 ~ 1280397 (-)
AMCG00014091 NA coding upstream 814278 1391356 ~ 1412847 (-)
AMCG00014090 NA coding upstream 876697 1453775 ~ 1454617 (-)
G67658 NA non-coding downstream 66144 500007 ~ 501785 (-)
G67646 NA non-coding downstream 180988 386733 ~ 386941 (-)
G67638 NA non-coding downstream 221804 344414 ~ 346125 (-)
G67633 NA non-coding downstream 247309 256400 ~ 320620 (-)
G67686 NA non-coding upstream 293975 871053 ~ 871627 (-)
G67691 NA non-coding upstream 520578 1097656 ~ 1097979 (-)
G67818 NA non-coding upstream 1243534 1820612 ~ 1821759 (-)
G67849 NA non-coding upstream 1364949 1942027 ~ 1942420 (-)
G67881 NA non-coding upstream 1479771 2056849 ~ 2059491 (-)
G67612 NA other downstream 396715 61992 ~ 171214 (-)
G67683 NA other upstream 213450 790528 ~ 790957 (-)
AMCG00014098 NA other upstream 987700 1564778 ~ 1569929 (-)
G67813 NA other upstream 1224584 1801662 ~ 1869448 (-)
G67825 NA other upstream 1263087 1840165 ~ 1842445 (-)
G67824 LOC103352860 other upstream 1282464 1859542 ~ 1863693 (-)

Expression


Co-expression Network