AMCG00014111


Basic Information

Item Value
gene id AMCG00014111
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1900220 ~ 1902687 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014111
ATGCAGAGCCTGTGTGGAAGCGCTTTTCGTTCAGCAGCGGTCAGACAGGCCAGTGCGGTGACGTCACGCCGCCCTGGACAACTTCCCCCTGCTGATGTACATCCTGGCCGCCAAGACGCTGCTGCTGTGCCTGGGCTTCGCCGGAGTCAAGCTCTACCAGAGCCGCAAGGCCGACGCGGAGCTGAAGAAGCGGGAGGAGCTGAAGAGGCGGGCCCGGGAGGCCCTGCTGGCCCAGCAGGAGGAGGacgagggagaggaagaggaagaggggaaCAAGAAGGAGGACTGAGGGCCAGGAGCAGCACAGGcctgtctctcagtgcagtgtgggacGGCCGCTGTGGGCAGGAGTGA
>TU84682
TGTGCGGTGTGCGGTGTGCTGACACCGCGGTGTGTTAATGGGGTGTCGCTGTGCGGGTGTGGGGGGCGTGCGGCCCGGCTTGTCTCGCTGTATAATGACGAGTGCCCGGCTGTGCGGTACACCTGGCGCACCGAGCACCGCCCGCTGCTGGGGACCGGGGACCGGGGACCGGGGACCGGGGACTGGGGACTGGGCGGACGGGTAGCTCACTCCAGTGCGGTCGACCTTTCAAACCGCTCCGCATGCAGAGCCTGTGTGGAAGCGCTTTTCGTTCAGCAGCGGTCAGACAGGCCAGTGCGGTGACGTCACGCCGTGATTGACGGCTGCGTTGTTCCCTCTGCCGGCCCTGTGAGTGACACTGATAGGGGCCCCCTCGCCCCCAGCAGCTGCAgtgactgacactgacacactggacaGCTGCAGAGGGTTGTTGTGGCAGGAGTGCTGTGGATCGGGTGTCCCTGCTGACGCCTCGGTGCTGCTGTGTCCGCAGGCCCTGGACAACTTCCCCCTGCTGATGTACATCCTGGCCGCCAAGACGCTGCTGCTGTGCCTGGGCTTCGCCGGAGTCAAGCTCTACCAGAGCCGCAAGGCCGACGCGGAGCTGAAGAAGCGGGAGGAGCTGAAGAGGCGGGCCCGGGAGGCCCTGCTGGCCCAGCAGGAGGAGGacgagggagaggaagaggaagaggggaaCAAGAAGGAGGACTGAGGGCCAGGAGCAGCACAGgtggTGGAGTATCTGGCCGTGGGGGGTCCTCTCTGTGCTGGAGGGGCACTGTCTGTCGgcggacacacagacacgccaGGCGGGGAGCTGAACACGGACTGGCAGGAACCGCGGACACAGGAGAGCagcttttcatatatttatgacTTTTCTTTCCCTCCAACCTTTTGTAAATAAAGGTATTTTTTCAACAGTT

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014111 False 354 mRNA 0.65 3 1900462 1902687
TU84682 True 926 TUCP 0.63 2 1900220 1902615

Neighbor

gene id symbol gene type direction distance location
AMCG00014103 NA coding upstream 21260 1872749 ~ 1878960 (+)
AMCG00014102 app coding upstream 30778 1858678 ~ 1869442 (+)
AMCG00014101 NA coding upstream 66860 1825855 ~ 1833360 (+)
AMCG00014100 NA coding upstream 86922 1799682 ~ 1813298 (+)
AMCG00014095 NA coding upstream 335646 1545327 ~ 1564574 (+)
AMCG00014106 NA coding downstream 18652 1921339 ~ 1925062 (+)
AMCG00014112 NA coding downstream 105915 2008602 ~ 2022266 (+)
AMCG00014113 NA coding downstream 121911 2024598 ~ 2028511 (+)
AMCG00014120 NA coding downstream 180739 2083426 ~ 2113366 (+)
AMCG00014124 NA coding downstream 259070 2161757 ~ 2172540 (+)
G67789 NA non-coding upstream 57775 1840165 ~ 1842445 (+)
G67792 NA non-coding upstream 78462 1820573 ~ 1821758 (+)
G67699 NA non-coding upstream 624004 1275991 ~ 1276216 (+)
G67698 NA non-coding upstream 649906 1250099 ~ 1250314 (+)
G67690 NA non-coding upstream 877407 981839 ~ 1022813 (+)
G67882 NA non-coding downstream 174616 2077303 ~ 2077602 (+)
G67899 NA non-coding downstream 245762 2148449 ~ 2148654 (+)
G67907 NA non-coding downstream 430804 2333491 ~ 2333944 (+)
G67908 NA non-coding downstream 447442 2350129 ~ 2373305 (+)
G67983 NA non-coding downstream 843557 2746244 ~ 2755484 (+)
G67801 NA other upstream 19179 1879091 ~ 1881041 (+)
AMCG00014104 cyyr1,LOC107751099 other upstream 62095 1835432 ~ 1838125 (+)
AMCG00014099 NA other upstream 402616 1479919 ~ 1497604 (+)
AMCG00014061 NA other upstream 1653218 136864 ~ 247002 (+)
G67577 NA other upstream 1793098 58449 ~ 107122 (+)
G67896 NA other downstream 224185 2126872 ~ 2130145 (+)
AMCG00014146 NA other downstream 804153 2706840 ~ 2710329 (+)
AMCG00014196 NA other downstream 2224789 4127476 ~ 4131718 (+)
G68475 NA other downstream 2746513 4649200 ~ 4651964 (+)
G68830 NA other downstream 5443508 7346195 ~ 7349467 (+)

Expression


Co-expression Network