AMCG00014119


Basic Information

Item Value
gene id AMCG00014119
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2085941 ~ 2124953 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014119
ATGCAGCTCCTCCGGCTCCACGCGTCTCTGAGGTCTCCGGTCACAAAGCAGGGACGGGCCCCCAGGGTGCTGAACCCAGGGATCTTGGCATATTTTggtggggtcaggggtcaggccAAGGAGACACAAGGATTGGAGGGAGGGAATCACGTGGCAGGGGTTAGTGATTACGATTTCGCCCGCTCTGCCACCAGGTGGGGCTGCAGCCACAGAGATGTGCAGGAGGGCTTCACGCTGGCTCAGACTCCGCCCAGACACAGCACTTATTTAACACTGGACGGACAGAGAGAACCCCCAACAGACGACGATGACAAGAACCTTCGTCTGGTTCTCTCTCAGTTCTACATACAGACCCCACCCTCAGTGACTGTTGATCGGGGAGGATCAGTCAGATTAAGTTGCTATATTCGCAGAGAAGCTTCAGTCAGCACCCTGACCTGGATCAAGCAAGAACCGGGTAATCCTCCGAGACCCATAGGATCATGGGAAAACAATGCGGATTCACTACAGGATGAGTTTAAGAACAGCAGTCGCTTTGCAATAGAAAGAAGCGGTGATGACTTTGACCTTAAAATATCCAGCACTGAACGGTCAGATGTTGGCAGATACTTCTGTGCAGCAGCTCAATCCAGATCTGTGCGTTTTGGTCAAGGAACTGTAATACAAATGAAAGATCTAGACCCAGAGTCCATCAGCAGGAGAGCAGTGCAGCCGCCTGTGTCTGTCCCCGTCCAGCCAGGAGACAATGTGACCTTGCAGTGTGTGATAGATTATTACACCTGTAAAGCAGAGCACAGTGTCGATTGGTTcaggcacagatcaggagaaTCCCTTTCAGGATTAAAAACCCATAACAACTGGATTGATCAGTGTGACCGCAGTGAGGCAGGAGGCAGTGCGGAGAGCCCATGTGGCTGCGGGGGCCACAGTGCGCTCTCTCTCAGTGTCCTGGCTCTGGCTgcagtgctctgtgtgtttgggACGCTCGTCACAGCGCTGCTGTGCAGGAGACACAGAGCAGAAGCAGCTTCTGGACGTCCTCCTCACAGTGACCAACACTGCAGCCCTGCCCACggcacagacacagagtcacAGTTGTTTGTCCTCCTGTACATTAGAGGGAGACACCCAGGCCTCAGCCCCCTCACCAAGATCCACTCAACTCGTGAGATCTGTGAAAGGGATGGCCAGTGGTCTCTGCTCACACTGTCCCACAGGGTCCTGTCGACCTCCTCCTATCGGGATGGATGCAGCGTCAGACGTTGCCAGATACTACTGTGGAGCAATCAGGGACACAACAGTGAGATTCGGATCTGGAACTTCAATACGACTGAAAGtttgccCAGCTAA
>TU84803
TTTAATCTCAACATTTCTAACATTGAAGCGTCAGACGTTGCCAGATACTACTGTGGAGCAATCAGGGACACAACAGTGAGATTCGGATCTGGAACTTCAATACGACTGAAAGGCTCAGGGTCCGTCAGCAGGAGAGTGGAGCAGCAGCCGGCATCTGTCCCCGTCCAGCCAGGAGACAGTGTGACTCTGCAGTGTACAATAC
>TU84810
CAGTCTCTGCATCACCTCTCTCTGCTGTGCTTTCAGAAGCAGCTTCTGGACGTCCTCCTCACAGTGACCAACACTGCAGCCCTGCCCACggcacagacacagagtcacAGGTACACAGCcctctgcacacagacacagagtcacAGGTACACAGTCCTCTGcccacagacacagagtcacagGTACACAGTcctctgcacacagacacagagtcacAGGTACACAGTcctctgcacacagacacagagtcacAGGTACACAGTCCTCT
>TU84811
AGCAGGGACGGGCCCCCAGGGTGCTGAAGCAGCTTCTGGACGTCCTCCTCACAGTGACCAACACTGCAGCCCTGCCCACggcacagacacagagtcacAGagaagagaaaaatatgtGCTGACATACGCAGCCCTGGACTTCGAGCAGAATAAAGGGAAATCTGGaagaaagaagaggagaaatgACTCAGAGTTGAGCTCAGACTATGCTGCTGTCAGGACCCAGCAGAGAAGATGAAATTGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014119 True 1350 mRNA 0.54 11 2085941 2124953
TU84803 False 202 lncRNA 0.50 2 2086111 2087121
TU84810 False 268 lncRNA 0.55 2 2095306 2095631
TU84811 False 246 lncRNA 0.53 3 2095067 2124907

Neighbor

gene id symbol gene type direction distance location
AMCG00014116 NA coding downstream 39694 2038470 ~ 2046247 (-)
AMCG00014114 son,LOC107709257,LOC107698212 coding downstream 48120 2032712 ~ 2037821 (-)
AMCG00014117 NA coding downstream 53512 2032241 ~ 2032429 (-)
AMCG00014115 son,LOC565999,LOC107698912,LOC107555269,LOC107709257,LOC107698212 coding downstream 54414 2029590 ~ 2031527 (-)
AMCG00014110 NA coding downstream 170351 1906150 ~ 1915590 (-)
AMCG00014118 NA coding upstream 26932 2151885 ~ 2154746 (-)
AMCG00014133 NA coding upstream 51866 2176819 ~ 2177304 (-)
AMCG00014136 NA coding upstream 143564 2268517 ~ 2278983 (-)
AMCG00014138 NA coding upstream 200149 2325102 ~ 2339187 (-)
AMCG00014132 NA coding upstream 417965 2542918 ~ 2548184 (-)
G67881 NA non-coding downstream 26450 2056849 ~ 2059491 (-)
G67849 NA non-coding downstream 143521 1942027 ~ 1942420 (-)
G67818 NA non-coding downstream 264182 1820612 ~ 1821759 (-)
G67691 NA non-coding downstream 987962 1097656 ~ 1097979 (-)
G67686 NA non-coding downstream 1214314 871053 ~ 871627 (-)
G67911 NA non-coding upstream 225172 2350125 ~ 2373329 (-)
G67953 NA non-coding upstream 483316 2608269 ~ 2608479 (-)
G68057 NA non-coding upstream 571855 2696808 ~ 2701159 (-)
G68061 NA non-coding upstream 582864 2707817 ~ 2710329 (-)
G68070 NA non-coding upstream 633532 2758485 ~ 2758840 (-)
G67843 NA other downstream 167759 1916727 ~ 1918182 (-)
G67832 NA other downstream 183326 1900640 ~ 1902615 (-)
G67835 NA other downstream 193388 1892063 ~ 1892553 (-)
AMCG00014108 NA other downstream 200509 1879203 ~ 1885432 (-)
AMCG00014105 gabpa,LOC106586689 other downstream 212519 1869850 ~ 1873422 (-)
AMCG00014134 NA other upstream 407001 2531954 ~ 2542697 (-)
AMCG00014144 NA other upstream 516106 2641059 ~ 2653247 (-)
G68088 NA other upstream 700609 2825562 ~ 2829144 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other upstream 1260804 3385757 ~ 3394754 (-)
AMCG00014228 NA other upstream 3534119 5659072 ~ 5678499 (-)

Expression


Co-expression Network