AMCG00014175


Basic Information

Item Value
gene id AMCG00014175
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3398291 ~ 3409107 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014175
ATGCAGATCGTAAggggtggggggggactcTTCCCGGAGGCCCAGCCCTGTGATGTGGATCAGGGGGCAGGGTGTCTGCAGCCCAGCCTGCCGTGCTCCTCGCCTGGCGTCTGCCTCCCTGAACTCCCGTCAGTTTCCACCGAGATCACCCAGCCGGCCGTACCCCCGCGCCCCACTGACGGCCTCCCCATGAGGACTCCCCCAGGGCTGCTGTCTGCGCTGCTCTTCCTGCACTGCTCTCTCTGTAAAGACTCTGCTGGTGGAAGGTGTCATGGGTTGAGACGCCTGGAGAACGGACGCACGTTTTTCCGCTATGGAGGCCTGTTTGTAACGTTCACCTGCAACCCGGGATTCCGGGTTCATGGCTATCAAACCAGCAGCTGTGTGTCCGGACGCTGGACCAGGGACCCCCCCGTGTGTGTAGGCTCGGGATGTCCGAACCCGGGGGGGATCCTCCACGGCAGCAGCACCATGAATCCGGACCGATCCTTCATCTTCTTCATCTGCGACAAGGGCTACAGGCTCTTCGGAGCTCCTCTGCTGTACTGCAGGGGCAGAGGGTGGAATGGCACGAAGCCGGTGTGCAAAGAGTCCGACATGATGAGTTCAGACAAGCACAAGCACCTTGCCCAGCTGCGGGCCAACCTGGCACAAAACCTCAATGCACCATCTGCTTTGAAAAACCTCTTCCGCGTCCAGTATGACAGCATCGTCAACTCGGCGTCCAAGGATGTGGTCCTGGAGCCGGAGCTACTGGTGGAGAGCCCGAGGGCCACCAACATCAAACCGGGACATCAAGCAGGGGCCCTGAGGCAGCTGACGGTGAGGAGCAGAGTCCCGGAGGTCAATGACAAGGGCATTTACGTTGACAAGCAGCACCAGTCTGGTAGAGCTACTGTGGGAGGTAGAGCTGGAGCTAAAGAGGCCTACAAGGAACCAGGCAGCTTTGAAAAGTCTCTCTTCAAGTTATCTTCCCTACAGACATCGCCCACCTCTCCCCTGTCCACTGCATCTACCCTGGCAGATAAACTCGTGACCacaactttacagttggcaaaAGTTACAGTTCCATGGGACAAAGTGTTCATAAGGTCAACCGTACAGATTCCAGCTTATCCGCTGATCAcagagcatgctgggaaaaTATATTATGTGGCCCCAACCTCACGTTCACCGTCCTTCACTGCACTATTGGCCCCACTGCGTAGATATGGCACCACTGACCAGACCCTTGTCATCCCTGAGCCCAGTTCAGAATCGTTATCTTCAGCATCAACAAGGGAACCACAGCTCCACATTCCAGAGAAAGTGCCCATTGTAATACAGGCTGCTCCTCAGACTCTAAATGCACAATCTCTGACACCATCTTCACTTCCCACGGTTCCTGCCACATCACTGGATACCCCCGTGACTGCAGAAGCCCTGCGCCAAGTGGCCGAGACTTCAGAAGGTTTGGAAGATGACATGGCTTCCCCTACCATGCTCAGCAGCTACACATCCCTATCTAGCGAGGGATTTTCAGCACATTTACAAAGTTCCCCAGTTCATCCTGTCCTTGTAGGGGAATCGGGCACAGGTTTGACACAAAGCACACCTCTTCAAGGCAGTTATGAGACTGGGCCCGATGGGCATTTAAAAATGGCACAGCAGCCTTCAGGTGAAACAGGGGCCGACCATTCAGAAGGAATTATTTCAACTACCGTCAATGAAACAAGTGTATATAGAGTGGGGAAAAGGATGAACCAAATGTCTACCACCACATTCGGCCCAAGTGCGTTTCATCGTGATTCTCTGGTCTCGGGCGCTGACTTGCAGCCTGTGATGAACAGCCCGGCACAGTCTGCTGCCCCTGTCATCACCAACTCTCAAGATGGAAGAAAGGACCGACAGAGGAAGACACCCACAGCGGCACAAAAGGATTTACAGCCAGAGAGGGAAGCTTTGGGAACTACCATTCTCACTGATTTGGGAGACGTCCGTCCCAGAGCTGGCTGGTGGGAAACTGCGGAAACAGATGTGGCCTCGGGATATCGCAATAAACACCCATTggcagagcagagcagcacGGCACCATCAGATGCCGCCAGTCGGACCACAGGAAATGATACTGACCAGCCGGTTAAGGCAACAGAACACACAGACGGAACCGTCAGCACTGTTCTGGAATCCCTGATCTCTATCACGGCAGGCCGGAGCCCCGTGCCAACACCTGCACACCTCCAAAGTCCCCTCGCCACCGCAATCAACAACTCCCTGCCCCTCGCAGTCCCCGGCCCCGTGCCCAGCGCCCCCCATCATAACTTGGTGGAGATCAGACCCGATGACCCGCCACCGCTGGGTTCTCTGAAGAGGAGGCCCGTGTGTCCATACCCACCTCTGCCCGCCCACGGGACCTTCTTCTTCCGCACGGTGCCCAACCCAGCCCCGCTGCAGTACAAGCACTACGTACAGTACTCCTGTTATGCCGGATACACTCTCGCCCACGGGGACGTCTACAGCTACTGTTTACACAGCGGCAAGTGGAGTGGAGTCACACCGGCCTGCTTAGAAGTGACGCCCTGCTCCATCAACAATGGGGGCTGCTCTCAGATCTGCAAGCTGGGCCTGCTGGGCCGGGCCGAGTGCAGCTGCAGGGAGGGCTTTGAgctgctggaggacaacagcacgTGCAGAGATGTTGACGAGTGTGCGGACGAGCTCCACCGCTGCCAGCAGGCCTGTGTGAACACCTTCGGCTCGTACGAGTGCGGCTGTGGCCCCAGCTACCTGCTGTCAGAGGACGAGAGGTCATGCTCAGACCGAGACGAGTGTGCCATCAATAACGGCGGCTGTCTGCACCACTGCGCCAACTCCGCCGGGAGCTTCCGCTGCCTCTGTGAGCCAGGCTTTCAGCTGGCAAACGACCAGAGGACCTGCCACGACGTGGACGAGTGCCAGCTGCCCATCGGCACGGCCGGTTGCTTGTTTGGCTGCATCAACACCCCGGGCAGTTTCCGGTGCCACTGCCCAGAGGGGTACAGACTGGGTACTGCGCACGGACATTGCATAGACATTGACGAGTGTGCGGAGAACAGCGGCCGCGGCCCCTGCGCCATGGAGTGCCACAACGCCCCCGGCTCATTCCGCTGCTCCTGCGCCTACGGGTACAAGCTGGCTGGGGACGGGCGCTCCTGTGTGGCCGAGTGCCCCTCTGGATACCGCAAGCACGGCAACGCAACCGGGAGGAGCAGAGAGCACTGCATTGATATTGACGAGTGCGAGGAGCCCACGTGGCACCAACGCAGGTGTGAGTGGAAGTGTGTCAACCTGCCGGGCTCCCACCGCTGCATCTGCCCGAGGGGGTTCAGGCTGGGCTCAGACGCATACCACTGCCAGGataTAAATGAATGCGAGTCTAAAAATGGAGGCTGTTCTCACATCTGCATCAACCACAAAGGAGGCTACAGATGTGCCTGTCCAGAACTCCACCGCTTCTCTCCCTACAGCAGGAAAAAGTGCCAGCCAGTCAAAACATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014175 True 3516 mRNA 0.58 12 3398291 3409107

Neighbor

gene id symbol gene type direction distance location
AMCG00014174 LOC108425737 coding upstream 1168 3391607 ~ 3397123 (+)
AMCG00014170 NA coding upstream 20018 3377692 ~ 3378273 (+)
AMCG00014171 NA coding upstream 27347 3339352 ~ 3370944 (+)
AMCG00014165 NA coding upstream 176370 3220203 ~ 3221921 (+)
AMCG00014166 NA coding upstream 222236 3171834 ~ 3176055 (+)
AMCG00014176 NA coding downstream 25050 3434157 ~ 3452490 (+)
AMCG00014173 rbbp7,LOC105893332,LOC108438657 coding downstream 52961 3462068 ~ 3471988 (+)
AMCG00014184 NA coding downstream 80372 3489479 ~ 3511658 (+)
AMCG00014182 NA coding downstream 117910 3527017 ~ 3554734 (+)
AMCG00014183 NA coding downstream 149811 3558918 ~ 3559709 (+)
G68167 NA non-coding upstream 22502 3375585 ~ 3375789 (+)
G68166 NA non-coding upstream 23143 3374837 ~ 3375148 (+)
G68153 NA non-coding upstream 170165 3226859 ~ 3228126 (+)
G68151 NA non-coding upstream 171792 3224574 ~ 3226499 (+)
G68046 NA non-coding upstream 421781 2976214 ~ 2976510 (+)
G68189 NA non-coding downstream 1871 3410978 ~ 3483649 (+)
G68292 NA non-coding downstream 545259 3954366 ~ 3955265 (+)
G68317 NA non-coding downstream 674656 4083763 ~ 4083964 (+)
G68374 NA non-coding downstream 884219 4293326 ~ 4293526 (+)
G68376 trappc2 non-coding downstream 885710 4294817 ~ 4295819 (+)
AMCG00014146 NA other upstream 687962 2706840 ~ 2710329 (+)
G67896 NA other upstream 1268146 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 1495604 1900220 ~ 1902687 (+)
G67801 NA other upstream 1517250 1879091 ~ 1881041 (+)
AMCG00014104 cyyr1,LOC107751099 other upstream 1560166 1835432 ~ 1838125 (+)
AMCG00014196 NA other downstream 718369 4127476 ~ 4131718 (+)
G68475 NA other downstream 1240093 4649200 ~ 4651964 (+)
G68830 NA other downstream 3937088 7346195 ~ 7349467 (+)
G68848 NA other downstream 4004533 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 4055396 7464503 ~ 7482560 (+)

Expression


Co-expression Network