AMCG00014180


Basic Information

Item Value
gene id AMCG00014180
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3410978 ~ 3432333 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014180
CTGCGCTCTGCCTGCTGTCATTGAAGGTTACCCTGCGGCGGTGCACGGATACATCAGCTAGACATGCACAGCGGGACAGCGACCACACTCTAGTGTATCTCTGCTAGCACTTTGCAAAAGAGGGACCTCTCCTGAGCGAGCATGCGCAGTCGCAGTAACTCGGGCGTGCGGCTGGACGGCTATGCCAGGATGGTGCAGCAGACGATTCTGTGCCATCAGaaCGCCGTTACTGGGCTGCTCCCCGCCAGTGACGTGCAGAGAGACGCCTGGGTCCGGGACAATGTGTACAGCATACTGTCCGTGTGGGGACTGGGCATGGCCTACCGCAAGAACGCAGACCGCGATGAGGACAAAGCCAAGGCCTACGAGCTGGAGCAGAGTGTTGTCAAACTGATGCAAGGCCTGCTGCAGTGCATGATGAGACAGGTGCAGAAAGTGGAGAAGTTCAAACACACCCAGAGCACCAAAGACTGCCTCCACGCCAAGTACCACACGGCCACGTGCAGCACTGTGGTGGGGGACGACCAGTGGGGGCACCTGCAGGTGGACGCCACGTCTCTGTACCTGCTCTTCCTGGCACAGATGACCGCGTCAGGTCTACGCATCGTGTCTAACTTGGACGAAGTGGCGTTCATACAGAACCTCGTGTTTTATATCGAGGCGGCCTACAAAGTCGCTGATTACGGGATGTGGGAGCGCGGTGACAAGACCAACCAGGGGATCCCAGAACTGAACGGCAGCTCCGTGGGGATGGCCAAGGCCGCACTGGAAGCCATTGACGAGCTGGACCTGTTCGGGGCACATGGGGGGCCGAAGTCAGTCATCCACGTTCTCCCAGACGAGGTGGAGCACTGCCAGTCCATCTTGTGCTCCATGCTGCCCAGGGCCTCCACCTCAAAGGAGATCGATGCCGGCCTGCTGTCCGTCATCTCGTTCCCGGCCTTCGCAGTGGAGGACTCGGACCTGGTGAACATCACAAAGAACGAGATCATCAGTAAACTGCAGGTAGAAGAGTACAGAGAGGCCCTGGACGGGATTCTCATTCGGAAAAAGAACGGCATCCGCTTGGTGCCGGAGCTGTACGCGGTCCCGGCTGACAAGGTGGAGGAGGAGTACAGCAGCCCCCACACCGTGGACCGCGTGGCGACAGGGAAGTTGCCTCACATGTGGGGCCAGTCTCTCTACATCCTGGGCTGTCTGCTGGCTGAGGGTTTTCTGGCCCCAGGAGAGATAGATCCCCTCAACAGGAGGTTCTCGACATCTTTCAAGCCTGATGTCGTTGTGCAAGtgtgtgtcgTGGCAGAGACCGAGCAGATCCAGGCCCTTCTGAGAGAGCAGGGTGTCGAGGTCCAGACCGTTGACCAGGTCCTGCCTATCCGCATCCTGCCGGCCCGCATCCTCAGCCACATCTATGTCAAACTGGGTAACAATAAGAAGTTGAAGCTGAGTGGGCGGCCATACAGACACATCGGGGTCCTGGGAACCTCGAAGCTGTACAGTCTCAGAAATCGCAGCTATACATTCACTCCACAGTTCATTGACCAGCACCACTTCTACCTGGCTCTGGACAACCAGATGATCGTGGAGATGCTGCGCACCGAGCTGGCCTACCTCTCGACCTGCTGGAGGATGACGGGGAGGCCCACCCTCACCTTCCCCATCACTCACAGCATGCTCAGTGAAGTCGACGGGACCATTGACCCGGCCATACTAGCCACCCTCCGAAAGTTGCAAGATGGATACTTTGGAGGAGCAAGGGTGCAGATGGGCCAGCTGGCCAGCTTCCTCACCACTTCCTTCCACACCCACCTGAGCTTCCTGGACGCGGACTGTAAtgtgctggaggaggaggacgagtgCGACAGCGTCAGTGAGGAGCAGTACGAGGACGGGGAGTCTCCCCAGGACTACTCCCACACAGGCACCTCGAAGGATGAGTTCGACCAGTACATCAACCACCTGCTGCAGAGCACGGTTTCCATGACCCACCTGCCCTGCGTCGTTCGGAGGGCCGGCCAGCAGCATATGTTCAGTGCAGAGCACACGACCAGAGACATCCTGTCCATGGTGGCCAAGGCCCAGGGATTCCAGGTGCCAAAGGTTTCCATGTGTCTGCCGGCCGTGCCTGTCCTAAACAGACACCGCAAGTCCCTGAACCTGCTGGACGTCCCCCAGTCACATCACACCACGAAGGACCTCAACTTCGATCTTCATCTCCCCCGGGACGCTCACGGCAAGGTGGACTGTGATTCGCTGGTGGAACAGCTGAAGGACTGCCCAACCCTGCAGGACCAGGCCGACATCCTGTACATCCTGTTCGCCCTGAAGGGCCCTGACTGGTGCGTGAAGCTGTCGGGGCAGTGCGGGGTGACCGTGCACTCCCTGCTCAACGAGCTGTACGGCAAGGCGGGCAGCGCCAAGGAGTGGGGCCTGATCCGCTACATCTCCGGCATACAGCGCAAGAGGGTGGAGGTGCTGGCCGAGGCCTGCACCGACCTCATCTCGCACCACAAGCAGCTGACAGTGGGCCTGCCTCCGGAGCCGAGGGAGAAAGTCATTACAGCGCCCCTGCCTCCCGAGGAGCTGAACAAATTGATCTACGAAGCCAGTGGACAGGACATCAGCATCGCCGTTCTCACACAGGAGATCATCGTGTACCTGGCCATGTACGTCCGGTCGCAGCCCTCGCTCTTCGGGGACATGCTGCGCCTCCGGATCGGCCTCATCATCCAGGTGATGGCCACCGAGCTCGCCCGCAGCCTGCACTGCTCAGGTGAAGAGGCGTCTGAAAGTCTGATGAACCTGAGTCCTTCCGACATGAAGAACCTGCTTCATCATATCCTGAGTGGGAAGGAGTTTGGGGTGGAGAGGAGCATGCGACCTATTGAGTCCACTGCCACCAGCCCGGCCATATCGATCCACGAACTGGGCCATACTGGAGCCACCAAGACCGAGCGCACGGGCATCACCAAACTGAAGTCTGAGATGAAGCAGAGGTGCAGCAGCCCCTCCTCCCCCAGCGGCACATTGTCCCCCACCGGCCCGGGGACGCCCCACCTGCACTGGGAGGAACGGCAGGGCCAGTGGCTGCGCAGGAGGCGTCTGGATGGGGCCATCAACCGGGTGCCCATGGGTTTCTACCAGAAAGTGTGGAAGATCCTACAGAAGTGTCACGGTCTGTCGATTGATGGCTACGTGCTTCCTTCTTCAACCACTCGCGAGGTCAGTCAGACCTCGGCAGACCTCTACCGCAGTGTTTCCGAGCAGCTCTCACCGACTCACGTGGTGGTGTTTTCTCTCCCCCCCGCGCAGATGACGGCGTGCGAGATCAAGTTCGCGGTGCACGTGGAGACGGTGCTGAACCACGTGCCACAGCCCGAGTACCGGCAGCTGCTGGTGGAGGCCATCCTGGTGCTCACGCTGGTGGCCGACATGGAGGTGCACAGCATCGGGGGCATCATCCACGTCGACCGCATTGTCCACATGGCCAACGACCTCTTCCGCCAAGACCAGAAAGTGCACGGAGCCGGCGAGTATTTCCTGGAGCAGGACCCGGCCACGGGGATCTGCACCTTTTTCTACGACAGCGCCCCCAGCGGCAGCTACGGCACCATGACTTACCTCTCCAAAGCAGTGGCGACCTACGTCCAGGACTTCCTTCCAAACACCAGCTGTCTGATGCAGTAGAgggtgtatttgtgtgtgtgtgtgtgtctggagttTTAGTTTAATGAGACATTTTTACAGTATTCGGCCACTCGTTGCACAGAGggtaattattatttagtgtTGTTTTAATCTATTGAATCAGGGCACAACTGTAACTGCCTTGAAAACTATGTGAAGCATGTAGAATGGTTTTTATTGTCATATTGGAAGGTCCATTTACTTGAtgattgaattgttttgttctgttcacaGTCTGTTCATGAGGCAGGACGTCTCTGGGGTGATACGGTCACACTATGTTCAATAAGTGCCTGTTTGGTTGcatcatttatatatgtgttgtTAGTCTGACAAGAAATTATTTTGGAATAACGGTTGAGTGAATACTGTGGTTTAAACATGAAAGCCCAGGGTGTGTTTCATTATCTGCTCTCTGCTTTATTGCAGTTCCATCACTCAATGATTACCtcattgtcattttgttttattaggtACGGATGCCAGTAACATTATTTATCCATTTCTGtttagaacaaaaataaatagacaagtTAAAGCATGTAGATTGTATTTTGGATGAGGGTTCTTCTGGTTTCTGGGTGGCATTGATAGCTGGACTTGGGTTCCCAGATGTCCTTCAAACTGACATCAACTACAATAACAGGGTaggaattcattttaaaaaggaggAAACTAAAAACTGCCAATATTCAGCTGCATGGTGGATAAGATCCTTCAAATACATTCTCTGAGCCAGCCTGGTTCACAGTGTTACCTGTCACTTACCTCctcatatttatttcagtgtagtGGTTCATATATTCTGTGGTATcccgttttctttcttttagagTGTAATATTGAGCCTCGTGCAGTGCGGACATCTCCAAAGGGACCTACGCCaggacacacaaataaaaacagcttctcAATGCAGTGTCTGTGCTGTCCGATCTGTAATAGCAGCGCTTCTGTGtccgttgtgtgtgtgtctgtacctCAGCTCCACTGTAGTTAGGGCATAAGTGTTCCCCTGGCTGTCCTGGCGTCTGCGTGTCTCGTCTCTTGCAGTCGCCATGTGTATCTCTGCATTCTCCATCCCGTGTTACTGCTGTATCCTTGACAGTTCGGCTCATTAAAGGACgaaacctgttttaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014180 True 4830 mRNA 0.55 29 3410978 3432333

Neighbor

gene id symbol gene type direction distance location
AMCG00014172 LOC108425706,LOC106572425 coding downstream 35825 3372298 ~ 3375153 (-)
AMCG00014168 scml2,LOC104928288 coding downstream 159131 3250317 ~ 3251847 (-)
AMCG00014167 NA coding downstream 173950 3229180 ~ 3237028 (-)
AMCG00014169 NA coding downstream 215864 3184977 ~ 3195114 (-)
AMCG00014158 NA coding downstream 458923 2945902 ~ 2952055 (-)
AMCG00014178 zrsr2,LOC107729896,LOC106575977,LOC107602790,LOC107753840 coding upstream 22478 3454811 ~ 3462463 (-)
AMCG00014179 NA coding upstream 39588 3471921 ~ 3479370 (-)
AMCG00014177 LOC106574796,LOC106593175 coding upstream 48016 3480349 ~ 3487826 (-)
AMCG00014185 NA coding upstream 134178 3566511 ~ 3573447 (-)
AMCG00014190 LOC106581913,LOC105898087 coding upstream 224744 3657077 ~ 3678256 (-)
G68162 NA non-coding downstream 182828 3226865 ~ 3228150 (-)
G68124 NA non-coding downstream 378214 3029109 ~ 3032764 (-)
G68077 NA non-coding downstream 605814 2776259 ~ 2805164 (-)
G68078 NA non-coding downstream 608934 2782510 ~ 2802044 (-)
G68076 NA non-coding downstream 640318 2769838 ~ 2770660 (-)
G68224 rbbp7,LOC105893332,LOC100695351,LOC103023991,LOC106520888 non-coding upstream 31102 3463435 ~ 3464792 (-)
G68304 NA non-coding upstream 524669 3957002 ~ 3957266 (-)
G68324 prps2,LOC108413289 non-coding upstream 663882 4096215 ~ 4098475 (-)
G68325 NA non-coding upstream 667231 4099564 ~ 4099927 (-)
G68336 NA non-coding upstream 673185 4105518 ~ 4129741 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 16224 3385757 ~ 3394754 (-)
G68088 NA other downstream 581834 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 757731 2641059 ~ 2653247 (-)
AMCG00014134 NA other downstream 868281 2531954 ~ 2542697 (-)
AMCG00014119 NA other downstream 1286025 2085941 ~ 2124953 (-)
AMCG00014228 NA other upstream 2226739 5659072 ~ 5678499 (-)
AMCG00014241 NA other upstream 2627156 6059489 ~ 6108358 (-)
AMCG00014271 NA other upstream 3945755 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 3969819 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 3981396 7413729 ~ 7423291 (-)

Expression


Co-expression Network