AMCG00014181 (ppef1,LOC105893339,LOC108425737,LOC107695075)


Basic Information

Item Value
gene id AMCG00014181
gene name ppef1,LOC105893339,LOC108425737,LOC107695075
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3385757 ~ 3394754 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014181
ATGGAGACGTCGGAGTCGAGGAAGGGCACCTCCAGGCTGGCGCTGGGGCTGGCCACGCTGCGCGGGGCAGGGTCCTTGTCCCACGAAGAGGAGGACTTGGCTTGGCGCCGTTTGGAGGAGCCACTGCCGCCGCGGTCCGTATACGAGCCCACCACCTGTCTGTGGCCCCTCTCCTCGCCGAGGTCGAGGCTGCGCTTCGGGGGCCTGAGTGCGGACTTGAACTACGATACAGGAGAGAGACGTTGGAACTGGAGACGAGACTTACACGGAAAACTGGACGATTTATTGCTTATATTCTACaagaatGGTCTTCCTTCTGCCGAAAATCCATACGTGTTCAACGGCGATTTTGTTGACCGGGGAAAGAAGTCCATGGAGATCATCATCATCTTGTTTGCTTTCTTGCTCCTGTATCCCAATCACATGCACCTGAACCGGGGGAACCATGAAGACTACATCATGAATCTGAGGTACAGTCGACCCCGGGTCTCTGACTGGGGGCAGGACCCTCCGAAGCCACGCCCCCACTCTTTACTTAATTCTGCTGTTTGCACGGTGCAACACAATTTTAAGTGTTGCAAAAGAGTCCTGCCAGCCATAAAAGCGGCAGTGCTGATCCAAAGATGGTACCGGCGTTACATGGCCCGCCTGGAGATCCGGCGCAGATACACCTGGAGCATCTTCCAGTCCATCGAGTACGCGGGCGAGCAGGACCAGCTCCAACTCTCcagttttttcagtttcatgctGGACAACTTCACTCAGCTCAGTGGGAACGCTCCAGATCTGATCTCCCAATTCTTCGACCCTGCCACTGACCCGGTGCGTGACGAGGGGAAGCGAGCCAAGTACGAGCAGATCGAGGTGCCGGAGTCGTACTTGGGGCCCCGGCTGGCCTTCCCTCTCACGGTCACTCACACCAACGCGCTCCTCAGTGCCTTCAAGCAGCAGCAGGTTCGTGACGTCCGCAGGGCCTCCTCAGGTGCCGTGTCCACGCTGACCCAGAATCACGGCACTACACTGATATTGTGGGGTACCCTCCACGCCCGATACGTCCTTGAGTTGTTTTACGAAACCAAGAAATTCCTGAAGCAGATGCCCAACATCATTCACTTGTCAACTTACAGCAAAGAGATCACAGTCTGTGGTACGCTGTGCTGA
>TU85184
GGAGACTTACACGGAAAACTGGACGATTTATTGCTTATATTCTACaagaatGGTCTTCCTTCTGCCGAAAATCCATACGTGTTCAACGGCGATTTTGTTGACCGGGGAAAGAAGTCCATGGAGATCATCATCATCTTGTTTGCTTTCTTGCTCCTGTATCCCAATCACATGCACCTGAACCGGGGGAACCATGAAGACTACATCATGAATCTGAG

Function

symbol description
ppef1 Predicted to enable protein serine/threonine phosphatase activity. Predicted to act upstream of or within detection of stimulus involved in sensory perception. Predicted to be active in cytosol and nucleus. Orthologous to human PPEF1 (protein phosphatase with EF-hand domain 1).

NR:

description
PREDICTED: serine/threonine-protein phosphatase with EF-hands 1

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function
GO:0046914 transition metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014181 True 1161 mRNA 0.56 8 3385757 3394754
TU85184 False 215 lncRNA 0.44 2 3390988 3391380

Neighbor

gene id symbol gene type direction distance location
AMCG00014172 LOC108425706,LOC106572425 coding downstream 10604 3372298 ~ 3375153 (-)
AMCG00014168 scml2,LOC104928288 coding downstream 133910 3250317 ~ 3251847 (-)
AMCG00014167 NA coding downstream 148729 3229180 ~ 3237028 (-)
AMCG00014169 NA coding downstream 190643 3184977 ~ 3195114 (-)
AMCG00014158 NA coding downstream 433702 2945902 ~ 2952055 (-)
AMCG00014180 NA coding upstream 16224 3410978 ~ 3432333 (-)
AMCG00014178 zrsr2,LOC107729896,LOC106575977,LOC107602790,LOC107753840 coding upstream 60057 3454811 ~ 3462463 (-)
AMCG00014179 NA coding upstream 77167 3471921 ~ 3479370 (-)
AMCG00014177 LOC106574796,LOC106593175 coding upstream 85595 3480349 ~ 3487826 (-)
AMCG00014185 NA coding upstream 171757 3566511 ~ 3573447 (-)
G68162 NA non-coding downstream 157607 3226865 ~ 3228150 (-)
G68124 NA non-coding downstream 352993 3029109 ~ 3032764 (-)
G68077 NA non-coding downstream 580593 2776259 ~ 2805164 (-)
G68078 NA non-coding downstream 583713 2782510 ~ 2802044 (-)
G68076 NA non-coding downstream 615097 2769838 ~ 2770660 (-)
G68224 rbbp7,LOC105893332,LOC100695351,LOC103023991,LOC106520888 non-coding upstream 68681 3463435 ~ 3464792 (-)
G68304 NA non-coding upstream 562248 3957002 ~ 3957266 (-)
G68324 prps2,LOC108413289 non-coding upstream 701461 4096215 ~ 4098475 (-)
G68325 NA non-coding upstream 704810 4099564 ~ 4099927 (-)
G68336 NA non-coding upstream 710764 4105518 ~ 4129741 (-)
G68088 NA other downstream 556613 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 732510 2641059 ~ 2653247 (-)
AMCG00014134 NA other downstream 843060 2531954 ~ 2542697 (-)
AMCG00014119 NA other downstream 1260804 2085941 ~ 2124953 (-)
G67843 NA other downstream 1467575 1916727 ~ 1918182 (-)
AMCG00014228 NA other upstream 2264318 5659072 ~ 5678499 (-)
AMCG00014241 NA other upstream 2664735 6059489 ~ 6108358 (-)
AMCG00014271 NA other upstream 3983334 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 4007398 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 4018975 7413729 ~ 7423291 (-)

Expression


Co-expression Network