AMCG00014182


Basic Information

Item Value
gene id AMCG00014182
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 3527017 ~ 3554734 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014182
ATGAGAGGGAGCCGGCTGCTGGATTACCTCAAGGGGGGGAGGAAGATGAAAATGGTGGATATTGTAGCGCAGAAAATGCCCTCAGAAAGTGACGTTCACGTGGCCAGGAGCTTTCTAACGAAGATTTTGCGCAGTTCTATGAGGAGGAATGAACCTGCAAGCAGGCCTCACTCTTGGCACTCCACCAAGTTCACTGAGAGCCAATCGGAAGCAGCGAAAACACAAGTGACTCCCACGACCGTCTGGCACACGAGATACGATGCAAGCTCATCCTCACATGACCTCTCCAGCTCTTGGGACCAGACAAACCTGCGGCGCGTGTCGGACCAGTTCAGCTCCCTGGGCAGCATGGACAGCCTAGAGCACTCCTCGCACCCGTACCCCCCCGGCCGGCTCTCCCCCACCAAGTCCAACAACAGCATTGACCACCTGGCGGGCGGTGGCGGGGGCAGCAAACGCGACTCGGCCTACAGCTCCTTCTCCACCAGCTCCAGCACGCCGGATTACCCGCTGTCCAAGAGCAACGCGGCCTCCACCGAGAACATGCTCTACAAGGTGAACCAGTGGGAGTCCAGCGGCAGACACGGCAACGGCAGACACAGCCAGAGCCTGAGTGAGAGCGGCCGGACGGACGAGCGCCAGGGCTATCTGCAGCTGCCGCCCGGGACCGGAGGCCGAGAGAGCCCCAGGGCGGAGGAGCTGCCCGGCACCCGTTACTCCAGCTCCGGCAGATCCAACATCGGCCCGGTGTGGCACGTGCCCGAGAAGAAGAAGCGCGCCCCCTCTCCGCCGCCACCCCCGCCGCCGGTGCGCAGCGACAGCTTTGCGGCCACCAAGGTTCACGAGAAAGGTCTGGCGGCCCCTTACCTCGAGGGGTCCGGCCCGAACAACCCGCAGAAGCCTCCGGTCAGAGTCGGGGACTGGGGCCCCGTGGAGGCCAACGATAACCTTCCAAAAGCCCACCGTGTCCACGAACGAGGCTCCGAGACCAGACGGAGTTATAACCCGCCTCCGAAGACAGAGTCCCTTCCTCCGCACATCTCCATGGACACCTATAACAACAACCAGCTGAACTCGAACAAGCTGTACTCCTTGTCGAGCACAGACGTCCGGGTGGGCCAGCCTCCCTACACAGCCCCCCATCACCAGCGCCAGTACAGCGATGAAAGCACTTTCTATCCACAACCGAGATCGACATCTGTACCAAAGCAGCAGAACGTAGGCAGTTACTACAGCAGCATGCAGGAGCTCCCTACGGACGTCTTCAATCAGAACTACAACCAGGCCCACGTGCGGACCTCTAGTGCGTCCTTGTCCAGCGCTCCTATCGATCAAAACATGGAGAGTACCGGCCACAGCAGGTATTACTGTGTCACCGCAAGGCAGCCGGCCCAGACAGTCTCCCAGGCGTCTCTGGTGAGGGTGGAGGGGTGGAAAGGCAGCACAGGGACCGAGTCGGCCGCTGGTCTCAGTGAAAGGGGTTCTGCAGCCCCCCAAAAGGGTAATAAGGCCAAATACCCGCTACCTCAACCACAGCAGCCTTACCCTGACATCAAGGACAGCAATGGGTATTTCAGACTAGAGGGCAACCATGACAGGCCAGcgtcagctgctgctgctgtgcaggACGTCCCAGTGGTGAAACCTGGTGCAGAAGAGAGGGGCAGCCAAAAGAGTAACAATGGGTATAATGTGGAAACCCATTACATGAGCTACCCACCCAGTAAGCACGATGACTTGAAGAAGTATGGGGGTGTCCAGCCAAGAGACCAACCGGTAGAGCTGTGGGTGTCAGAAGAGGATGAGAAGATCAGTCCCCTGAAGACCCCCATGCTTCACTCTCTGGCTCAGGAGAGCATGGGTGTGCCCGACATGCCTGCAGATCCTCAGGGCAGCTGTGTTCTCGACCCGCTTGCAGCCAAGCAGGTGAGGCGCAGTGACCGCTATGCCACGACACTACGCAACGAGATCCAGATGAAGAGGGCTCAGCTGCAGAAGAGCAAGAGCGCTGCCACCTTGACCGGTCCCAACGAGGCGGAGGAAGACGCTGAGGTCTGGAAGGCCGAGTCGACGGAGAACTCCAACTCCTCCTCGGACGGCTCATTCTCCAGCACCTACAAGGACCACCTGAAGGAAGCGCAGGCTCGAGTCCTCAGGGCCACGTCTTTCAGGAGACGGGATCTGGAGCCTGTTTTACTGGAGCTTCCGGGACCCGACGCCCCTCCCGGTTACTCTTCCTCTGCCGTTAACCCCCTGCCTGGCTGCTCCGAGGTCCCCCAGAACAAGGCCAGCTCTGCCTCGGGAAGTGGCGGCCCTCACATGTCCCGAATTGGGGGCAGAAAACGATTCACGCAGGAGCAGAAAGTAAGGTCCTACTCGGAGCCGGATAAGATGAACGAGGTCGGGGTCGGGGAAGCGCAGCCTCACCCAAAGAAGGTCACGTCTTTTGCAGACCGCCGCAAATTCTTTGAGGCCACAAGTAAGACCGGCTTCTCTAAACCGGCGCCCAGGCAGACGGCCTTTGAAGAACACGGCGAGACCCGGCTGGCCAGGAAGCCGCATCCCGGAGAGACAGAGGAGTCGTGGCACGAGCGGAGGTCTCGCGCAGCCTCGTTCGGCTACGAGTGTTCGCTGGGCGCCCTGGACGAGGATAAGGACGAGTACGACGTCAGCAGGAAGGCAGCGGACCGGTACACGATGTTGGAAATGCAGAGGCTCGGGACTTTCGCGGAGTATGAGGCCACGTGGAACGAGCAGAGGAAGCCGTCGGAGTCCAGGACGACGGGGAGGTATCACTCGGCCGACAACATCCTGGATGCAGGGGCAGAGGAGTGTACGAAAACGTCGTATGTGCACGAGAGGTCCAGGTCGTCCCCGTCGGCGGATTTCCACGGACAGAACGTCCCTGTGCAAGGAAGGAAGACGGCGGATTACTCTCAAAGAGACCAAAAGCCGGCTGGGTTTCAAAACACGGACGATGAGCCGCCTCCCGCAAGGGTGGGAGCGCTCCTGGCCTGTCTCACCTGTCTTTGCTTTCCTTCAAGCCTCTCTCCTGGCTCCACTCTCTGTGCTCAGACCTCCgccagcacagagcagagcgCCTGGCTCTCCGTGCCTGACAGGCTGTCTGATGGAGGGCACAGAGAAAGCCGATTGGACCAGAAGCGGCCTGTGAGTGACCAGGGCTCGGAGCCCCCCCGTCACCCCTCCTACCGCCCGCCGCCCGCCGAGCTGCTCCTCCACGGAGACGCACAGAGCAGGGACCGGGCTGCCACCCTCCCCGGGGACCTCAGACACCACGACGGCGAGGCGCCCCCTGGCAAGGACGGCGGAGATGTGAACCCTGCCCTTCCCACTCGCCCGGAGCACCAAGCTGCGATCGATCCCGGAGTCAGAGCTCTCGGCGCCCCCCCCGAGCAGCCAGGGCCAGGGCCAGGGCCTTCCAGCAAGAAGAGAGGGCCGGTGCCACAGAGGCCCCCCCCGCCCAAACTAGACAAATACAGACGTCAGGAGACCACGTCCTCCTTGAGCGACTCCTCCGAGTCGCTGCTGGGCTCCCAGAGCGCCAGGGCGGCCCGGCCCCGCTCCCCCGGACCCGAGCGGCCCCCCGGCACACCCCCACCCCAGGCAGGGCCGGAGGAAGAGCAGGGGGCTGCGACGAGAGGAAACCCCCCGAAACCAGAGCCGGCaccaccccccgccccctccctctccccggCCCCCTCCTCCCAGGGTGCTGGTCTGCCGAGGTCCTCCATGGATGGACCGAGGACGCCCTCCCCACAGTTCGCTCCCCAGAGACTGACTGACAAGCCGCCCGTCTCCCTCCAGGATGAAGCTCCGAGCAGGGTCGAGAACGTGACGGAGAGCAATGCCGTGGTGAAGAAGGTGCCCATCAAGATCGTCCACGCCGAGAGCAGCCTGGAAAAGCAGAGCCGCCAGTACCTCCTGCACAGCGTGGGCCGGGCCGGCTCCCCCGAGGGCCAGGACGGTCCCCAGGTGAAGACCCTGGGCTCCTCGGAACAGTCCTACTCCCTGTTCTGCGCCTACACGCGGCCCGGAGATGCGGCGCCCAGCGAGCCGCCACCGCCCCCAGGCAGGGAGGGCAGCCTGAGCGCGGCGCAGGTCAGCGGCAACGGGGTACCGGGCATGACGGACAGCGCCGAGGACGACAAGAAGACCGAGGAGCTGGCCAGGGAGATCGTGGGCAAGGACAAGTCTCTGGCAGACATCCTGAACCCCAGCAGCAGGCTGAAGACCACCATGGACCTGATGCAGGGGATTTTCCCCCAGGATGATCAGCTGCTAGAGGGGGCGCAACAGCGCAGGAAAGTGGCCCCCAAGCAGGCCTCCCCTAGGGCCACGGAGGAGAAgaAGGAGGACGAGAGTCTGGCCGCGTCCGCGCTGGTCACCAGCTCCTCGTACTACAGCACGTCGGCCCCGAAGGCGGAGCTCCTGATCAAGATGAAGGACATGCAGGAGCAGATCGAGGAGCAGGACTCCGAGGACGAGCTGGACAACGACCTCTCCGAGAAGAAGCAGGAGCTGATCGACAGCATCAGCAGGAAGCTGCAGGTGCTGCGAGAGGCGCGCGAGAGCCTGCAGGAGGACGTCCAGGCCAACAACGCGCTTGGCGACGAGGTGGAGGCCGTGGTGCAGCAGGTCTGCAAGCCCAACGAGTTCGACAAGTTCCGCATGTTCATCGGGGACCTGGACAAGGTGGTCAGCCTGCTGCTGTCGCTGTCCGGGCGGCTGGCCCGGGTGGAGAACGCCCTGAACAACCTGGACGACAAGGCCTCGGCCGAGGAGAAGCGAACCCTGATGGACAAGAGGAAGCTGCTGATCAGGCAGCACGAGGACGCCAAAGAGCTGAAAGAGAACCTGGACCGCCGGGAGCGCGTGGTCTTCGACATCCTGGCCAGCTACCTCAGCGAGGACAACCTGGCTGACTACGAGCACTTTGTCAAGATGAAGTCGGCGCTCATCATCGAGCAGCGCAAACTGGAGGACAAAATCAAGCTGGGGGAGGAGCAGCTCAAGTGTCTGACGGACAGCCTGCCGCTGGACCACAGAGTGCCTTTCTGAGAGCTGCTCTTGGCCGCGGGACGTCCTGGACGCTTAGGGGCGGACGTGAGCGCACGGGCCTCCTCAGAGACGGACACGCGCACAAGAGAGTGCTTTCCGTTTGCGCTGCACTGTTGTTTTGCTGAAGCCGTTTCGTGTTCCTCTTCAAAGAGAACCGAATCTTTGTATACCTTTCCTGTCATTTCATCAGGAGTGGCCGTTTGCTGAAGTGACAATAAAGGAGTACCTAGGCAATTGATCTCTCCCACGCCTGCGATTATGGTAGTGCAGACTCGTATTGTATGTGGGGTATCGCAAACCCCTTGCTTCTGCATGAAATAAGCACCTCTGcaaatgactttttttgttttttaggctGAAGTGCATCATTCTTTTGTCTATTTTCTGGTTGAAAACCATAATAAACTGTGTTGTAGTAATTTATTCTAGCCTTTTAAATTGTTACAAAGAACCTGAGGATAGAACTGTGTTTTAATCTTAACCAGGAAAAACAATACCATGAAACCAACATGATTTTAACCATCGCAATCGCTCCTAAATCGTTTAGACTATAAGTGACATCATTACATAACTGTGACTGTTTGATAAGGCAAGTAAAAACAAAGCGAGACTGCGTGAGAACCGAGACGAAACACGATGTATCAGTCGAAATATGGTGCTGGTTCAGAAACAAATACCACTGCTGCATTGCTGTTTTGTCCGTCTCTTGAATTTGCTGCCAGGTGCACATCTTACgccttttgtatttttctaaatctCAGTTATTCTTTTCCGAAATGTAGAAATGATCCGTAAGCACCCATCCAACGGGACTTCTCAGACCTTGGCAGCCTGGGTACTATGTGTTTGAAAAGGTGCTCGTCTTGAAAGCTGGAAGGACCGGGGTACAGGAGCAGCCTTCACCCGAGAGCGAGATTTATCTGAAGTGGTGCTTGGCGATCTTGTGTCACTGCCCCTGAACAGTTtgttgatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgcttgttacTTGTGGAAGAActcgtcctctctctctgcttcggTCTCCTCCTCGGCAGGTTTCAGCCGGAGAAGAAAGCGTCAGATTGCAGCTGGAGTCCACGTCCTTCTCAAGTGCAAATAAGGGAATATTTAGAGTTTTCCCTGTTCGCTTTTctcaaatgttacatttcatgCTGGGTTAGCCTGTTatcgtttttttaaatgttatttttaaattctgagAGCGTGCCAGGAGGCAGGTAGACGCTGGGTGTAAAATGTGGAGTGTTCACACCGTCCAGAAGTGCCCTGTCAAGGTACCCAGGAGAGGATTGTATCAGCACATCTCTGCGGCGCTGCGATTTCCACAGAGACGCGTGTTGCGTGGTACAGCCTGGGACCCTGGCCTCGGATGGGCGTCGGGCAGGACTGGCATAATATACCCATTGTTGTTGCTATAGATTATTAAACTGAACTCTTAAATGAAGAGTTTAGTTGAAAtgtgaataattatttaatgataaaacattgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcaataCGGGGGCCCTTGCTCTAGCTTGACCAAAATATCCGACAGACGGCATCACAGACTCGCTGTGCGCCCCACATTGCCCCTCCGTTCATCACACTACTTTTAGCGTTTGCTTGGATaatcctgacacacacagtaaattatgaaataaacataCTCTGAGGGCTTATTTTTCCACTTCGGCTGGTATGTTAAGAggtctttttttatgttgtgtCCAATATAGCCACAAAGAAGGCTAATTTACAGCACATCGGTGTGACTGCATTGCTTGTCAATGagcctttttaatttaatgcaaatcCACAATCCTGTTAGAGGCGTGCACTCACTTGGTTTAACGCAGAACATGTCAGATTAACAGTAGATACCCTTTCAGGTCTGTTGCTGGTCTATGAGGATGAGTGTCCCTCGGCCCTGATGACTGGAGCCTAGTGTAGAGACTATACACACTCTGTACATCGCTGTGACTTATGGCTTATAATACTTGTACATGCTCAACTGTACTACTTTAATAAAGAGTCTggttgaatgtaaatgtaagttTGTTTCTTGTAATATAGCCTGTATTTGACTCTTGGTTCCTATTGTGTccaagtttgtttttgtccacGACTCGCAATTGAtggcatatatttttttttactgagaTTTTAAACTGCTGTGGTTTCCAGTtctgttttaaaggttttattagACTATATTTACCCGTATCTGCAGATTGAATTTGCTGAAATGCCCTGGTTTCATTTCCCT

Function

GO: NA

KEGG:

id description
K18625 SHROOM; protein Shroom

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014182 True 7399 mRNA 0.57 11 3527017 3554734

Neighbor

gene id symbol gene type direction distance location
AMCG00014184 NA coding upstream 15359 3489479 ~ 3511658 (+)
AMCG00014173 rbbp7,LOC105893332,LOC108438657 coding upstream 55029 3462068 ~ 3471988 (+)
AMCG00014176 NA coding upstream 74527 3434157 ~ 3452490 (+)
AMCG00014175 NA coding upstream 117910 3398291 ~ 3409107 (+)
AMCG00014174 LOC108425737 coding upstream 129894 3391607 ~ 3397123 (+)
AMCG00014183 NA coding downstream 4184 3558918 ~ 3559709 (+)
AMCG00014188 NA coding downstream 27885 3582619 ~ 3582945 (+)
AMCG00014187 NA coding downstream 40361 3595095 ~ 3615081 (+)
AMCG00014186 clcn4 coding downstream 62493 3617227 ~ 3629082 (+)
AMCG00014192 msl3,LOC106574410 coding downstream 378524 3933258 ~ 3950277 (+)
G68189 NA non-coding upstream 43368 3410978 ~ 3483649 (+)
G68167 NA non-coding upstream 151228 3375585 ~ 3375789 (+)
G68166 NA non-coding upstream 151869 3374837 ~ 3375148 (+)
G68153 NA non-coding upstream 298891 3226859 ~ 3228126 (+)
G68151 NA non-coding upstream 300518 3224574 ~ 3226499 (+)
G68292 NA non-coding downstream 399632 3954366 ~ 3955265 (+)
G68317 NA non-coding downstream 529029 4083763 ~ 4083964 (+)
G68374 NA non-coding downstream 738592 4293326 ~ 4293526 (+)
G68376 trappc2 non-coding downstream 740083 4294817 ~ 4295819 (+)
G68422 NA non-coding downstream 946130 4500864 ~ 4550002 (+)
AMCG00014146 NA other upstream 816688 2706840 ~ 2710329 (+)
G67896 NA other upstream 1396872 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 1624330 1900220 ~ 1902687 (+)
G67801 NA other upstream 1645976 1879091 ~ 1881041 (+)
AMCG00014104 cyyr1,LOC107751099 other upstream 1688892 1835432 ~ 1838125 (+)
AMCG00014196 NA other downstream 572742 4127476 ~ 4131718 (+)
G68475 NA other downstream 1094466 4649200 ~ 4651964 (+)
G68830 NA other downstream 3791461 7346195 ~ 7349467 (+)
G68848 NA other downstream 3858906 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 3909769 7464503 ~ 7482560 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032109 shroom2a coding NC_007117.7 CM002890.2 30430591 ~ 30456075 (+)
grasscarp (Ctenopharyngodon idella) CI01000340_04249473_04264824 SHROOM2A coding CI01000340 null 4249473 ~ 4266007 (+)