Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00014220 |
| gene name | nlgn4,nlgn4x |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 5114650 ~ 5118152 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| nlgn4x | Enables several functions, including chloride ion binding activity; neurexin family protein binding activity; and protein homodimerization activity. Involved in several processes, including negative regulation of excitatory postsynaptic potential; presynaptic membrane assembly; and social behavior. Located in several cellular components, including cell surface; dendrite; and excitatory synapse. Is integral component of plasma membrane. Implicated in Asperger syndrome and autistic disorder. |
| description |
|---|
| neuroligin 4 precursor |
| id | name | namespace |
|---|---|---|
| GO:0007155 | cell adhesion | biological_process |
| GO:0016020 | membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00014220 | True | 972 | mRNA | 0.54 | 2 | 5114650 | 5118152 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00014218 | NA | coding | upstream | 34867 | 5079509 ~ 5079783 (+) |
| AMCG00014217 | NA | coding | upstream | 52378 | 5061832 ~ 5062272 (+) |
| AMCG00014216 | hdd1a | coding | upstream | 156401 | 4951330 ~ 4958249 (+) |
| AMCG00014214 | NA | coding | upstream | 263217 | 4837723 ~ 4851433 (+) |
| AMCG00014213 | anos1,LOC104963477 | coding | upstream | 368648 | 4723654 ~ 4746002 (+) |
| AMCG00014219 | NA | coding | downstream | 11019 | 5129171 ~ 5130645 (+) |
| AMCG00014221 | prkx | coding | downstream | 389872 | 5508024 ~ 5550098 (+) |
| AMCG00014222 | NA | coding | downstream | 477303 | 5595455 ~ 5607754 (+) |
| AMCG00014223 | NA | coding | downstream | 489621 | 5607773 ~ 5643489 (+) |
| AMCG00014225 | NA | coding | downstream | 603745 | 5721897 ~ 5739921 (+) |
| G68509 | NA | non-coding | upstream | 257420 | 4857029 ~ 4857230 (+) |
| G68497 | NA | non-coding | upstream | 329049 | 4785326 ~ 4785601 (+) |
| G68473 | NA | non-coding | upstream | 466437 | 4647710 ~ 4648213 (+) |
| G68434 | NA | non-coding | upstream | 526222 | 4584474 ~ 4588428 (+) |
| G68422 | NA | non-coding | upstream | 564648 | 4500864 ~ 4550002 (+) |
| G68538 | NA | non-coding | downstream | 333136 | 5451288 ~ 5451521 (+) |
| G68559 | NA | non-coding | downstream | 539098 | 5657250 ~ 5704009 (+) |
| G68589 | NA | non-coding | downstream | 661226 | 5779378 ~ 5782386 (+) |
| G68623 | NA | non-coding | downstream | 778918 | 5897070 ~ 5956185 (+) |
| G68635 | NA | non-coding | downstream | 894530 | 6012682 ~ 6013059 (+) |
| G68475 | NA | other | upstream | 462686 | 4649200 ~ 4651964 (+) |
| AMCG00014196 | NA | other | upstream | 982932 | 4127476 ~ 4131718 (+) |
| AMCG00014146 | NA | other | upstream | 2404321 | 2706840 ~ 2710329 (+) |
| G67896 | NA | other | upstream | 2984505 | 2126872 ~ 2130145 (+) |
| AMCG00014111 | NA | other | upstream | 3211963 | 1900220 ~ 1902687 (+) |
| G68830 | NA | other | downstream | 2228043 | 7346195 ~ 7349467 (+) |
| G68848 | NA | other | downstream | 2295488 | 7413640 ~ 7416594 (+) |
| AMCG00014272 | tbc1d23 | other | downstream | 2346351 | 7464503 ~ 7482560 (+) |
| G69406 | tgfbrap1,LOC102780916 | other | downstream | 4884906 | 10003058 ~ 10008648 (+) |
| AMCG00014345 | NA | other | downstream | 5029827 | 10147979 ~ 10151913 (+) |
